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    1810009A15Rik RIKEN cDNA 1810009A15 gene [ Mus musculus (house mouse) ]

    Gene ID: 66276, updated on 31-Jan-2019

    Summary

    Official Symbol
    1810009A15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1810009A15 geneprovided by MGI
    Primary source
    MGI:MGI:1913526
    See related
    Ensembl:ENSMUSG00000071653
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    This gene shares three exons in common with another gene, LBH domain containing 1 (GeneID:102308570), but the encoded protein uses a reading frame that is different from that of the LBH domain containing 1 gene. [provided by RefSeq, Nov 2017]
    Expression
    Broad expression in CNS E11.5 (RPKM 37.2), liver E14 (RPKM 28.7) and 25 other tissues See more
    Orthologs

    Genomic context

    See 1810009A15Rik in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (8888883..8890759)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (8963393..8965230)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3 Neighboring gene LBH domain containing 1 Neighboring gene RIKEN cDNA 5730408K05 gene Neighboring gene microRNA 5136 Neighboring gene integrator complex subunit 5 Neighboring gene alpha glucosidase 2 alpha neutral subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C11orf98 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025463.3NP_079739.1  uncharacterized protein C11orf98 homolog

      See identical proteins and their annotated locations for NP_079739.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the protein-coding transcript.
      Source sequence(s)
      AV210692, BC058702, BY264380
      Consensus CDS
      CCDS29555.1
      UniProtKB/Swiss-Prot
      Q9D937
      Related
      ENSMUSP00000093970.3, ENSMUST00000096251.9

    RNA

    1. NR_104416.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs at the 5' end compared to variant 1. It is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AV210692, BC058702, BY264380, BY273399
      Related
      ENSMUST00000186647.6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      8888883..8890759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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