Format

Send to:

Choose Destination
    • Showing Current items.

    Ssr2 signal sequence receptor, beta [ Mus musculus (house mouse) ]

    Gene ID: 66256, updated on 29-Jun-2021

    Summary

    Official Symbol
    Ssr2provided by MGI
    Official Full Name
    signal sequence receptor, betaprovided by MGI
    Primary source
    MGI:MGI:1913506
    See related
    Ensembl:ENSMUSG00000041355
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TLAP; TRAP; TRAPB; AI315033; AU020133; SSR-beta; TRAPbeta; 1500032E05Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 192.7), large intestine adult (RPKM 147.0) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ssr2 in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (88486915..88495727)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88579608..88588420)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88383593..88392335)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ubiquilin 4 Neighboring gene RNA transcription, translation and transport factor, pseudogene Neighboring gene predicted gene, 52660 Neighboring gene rho/rac guanine nucleotide exchange factor (GEF) 2 Neighboring gene predicted gene, 40090

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    translocon-associated protein subunit beta
    Names
    signal sequence receptor subunit beta

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356316.1NP_001343245.1  translocon-associated protein subunit beta isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AC145168
      Consensus CDS
      CCDS89648.1
      Related
      ENSMUSP00000141922.2, ENSMUST00000192495.6
      Conserved Domains (1) summary
      pfam05753
      Location:15181
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    2. NM_001356317.1NP_001343246.1  translocon-associated protein subunit beta isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC145168, AK005340
      Consensus CDS
      CCDS17480.1
      Related
      ENSMUSP00000141441.2, ENSMUST00000195014.6
      Conserved Domains (1) summary
      pfam05753
      Location:15179
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    3. NM_001356318.1NP_001343247.1  translocon-associated protein subunit beta isoform 3 precursor

      Status: VALIDATED

      Source sequence(s)
      AC145168
      Conserved Domains (1) summary
      pfam05753
      Location:15177
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    4. NM_001356319.1NP_001343248.1  translocon-associated protein subunit beta isoform 4 precursor

      Status: VALIDATED

      Source sequence(s)
      AC145168
      Consensus CDS
      CCDS89649.1
      Related
      ENSMUSP00000141325.2, ENSMUST00000193934.6
      Conserved Domains (1) summary
      pfam05753
      Location:15160
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    5. NM_025448.4NP_079724.1  translocon-associated protein subunit beta isoform 2 precursor

      See identical proteins and their annotated locations for NP_079724.1

      Status: VALIDATED

      Source sequence(s)
      AC145168, AK050505
      Consensus CDS
      CCDS17480.1
      UniProtKB/Swiss-Prot
      Q9CPW5
      Related
      ENSMUSP00000045456.8, ENSMUST00000035785.9
      Conserved Domains (1) summary
      pfam05753
      Location:15179
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      88486915..88495727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center