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    Rpl7l1 ribosomal protein L7-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 66229, updated on 2-Oct-2018

    Summary

    Official Symbol
    Rpl7l1provided by MGI
    Official Full Name
    ribosomal protein L7-like 1provided by MGI
    Primary source
    MGI:MGI:1913479
    See related
    Ensembl:ENSMUSG00000063888
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500016H10Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 27.1), liver E14 (RPKM 24.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rpl7l1 in Genome Data Viewer
    Location:
    17; 17 C
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (46773907..46782656, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (46910856..46919605, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene pre T cell antigen receptor alpha Neighboring gene RIKEN cDNA 2310039H08 gene Neighboring gene BRD4 interacting chromatin remodeling complex associated protein like Neighboring gene tubulin-specific chaperone C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    blastocyst formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    60S ribosomal protein L7-like 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025433.3NP_079709.2  60S ribosomal protein L7-like 1

      See identical proteins and their annotated locations for NP_079709.2

      Status: PROVISIONAL

      Source sequence(s)
      CT030702
      Consensus CDS
      CCDS28842.1
      UniProtKB/Swiss-Prot
      Q9D8M4
      Related
      ENSMUSP00000092888.4, ENSMUST00000078286.5
      Conserved Domains (3) summary
      cd01657
      Location:87246
      Ribosomal_L7_archeal_euk; Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The ...
      TIGR01310
      Location:15246
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form
      pfam08079
      Location:1685
      Ribosomal_L30_N; Ribosomal L30 N-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      46773907..46782656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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