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    Rpl7l1 ribosomal protein L7-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 66229, updated on 21-Apr-2024

    Summary

    Official Symbol
    Rpl7l1provided by MGI
    Official Full Name
    ribosomal protein L7-like 1provided by MGI
    Primary source
    MGI:MGI:1913479
    See related
    Ensembl:ENSMUSG00000063888 AllianceGenome:MGI:1913479
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500016H10Rik
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within blastocyst formation. Located in nucleolus. Is expressed in several structures, including brain; integumental system; pancreas; reproductive system; and retina. Orthologous to human RPL7L1 (ribosomal protein L7 like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 27.1), liver E14 (RPKM 24.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    17 22.9 cM; 17 C
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (47084833..47093582, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (46773907..46782656, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:46900557-46900758 Neighboring gene pre T cell antigen receptor alpha Neighboring gene RIKEN cDNA 2310039H08 gene Neighboring gene STARR-positive B cell enhancer ABC_E7539 Neighboring gene STARR-positive B cell enhancer ABC_E7540 Neighboring gene STARR-seq mESC enhancer starr_42679 Neighboring gene BRD4 interacting chromatin remodeling complex associated protein like Neighboring gene STARR-seq mESC enhancer starr_42682 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:46965989-46966172 Neighboring gene STARR-seq mESC enhancer starr_42687 Neighboring gene STARR-seq mESC enhancer starr_42689 Neighboring gene STARR-positive B cell enhancer ABC_E170 Neighboring gene tubulin-specific chaperone C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    large ribosomal subunit protein uL30-like 1
    Names
    60S ribosomal protein L7-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025433.3NP_079709.2  large ribosomal subunit protein uL30-like 1

      See identical proteins and their annotated locations for NP_079709.2

      Status: PROVISIONAL

      Source sequence(s)
      CT030702
      Consensus CDS
      CCDS28842.1
      UniProtKB/Swiss-Prot
      Q9D8M4
      UniProtKB/TrEMBL
      Q3U8B9
      Related
      ENSMUSP00000092888.5, ENSMUST00000078286.6
      Conserved Domains (3) summary
      cd01657
      Location:87246
      Ribosomal_L7_archeal_euk; Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The ...
      TIGR01310
      Location:15246
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form
      pfam08079
      Location:1685
      Ribosomal_L30_N; Ribosomal L30 N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      47084833..47093582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)