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    Llph LLP homolog, long-term synaptic facilitation (Aplysia) [ Mus musculus (house mouse) ]

    Gene ID: 66225, updated on 23-May-2018

    Summary

    Official Symbol
    Llphprovided by MGI
    Official Full Name
    LLP homolog, long-term synaptic facilitation (Aplysia)provided by MGI
    Primary source
    MGI:MGI:1913475
    See related
    Ensembl:ENSMUSG00000020224 Vega:OTTMUSG00000032589
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1190005P17Rik
    Expression
    Broad expression in liver E14 (RPKM 29.1), CNS E11.5 (RPKM 23.5) and 21 other tissues See more
    Orthologs

    Genomic context

    See Llph in Genome Data Viewer
    Location:
    10; 10 D2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (120227060..120232071)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (119664116..119669126)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38500 Neighboring gene transmembrane BAX inhibitor motif containing 4 Neighboring gene predicted gene, 40782 Neighboring gene predicted gene, 40783 Neighboring gene RIKEN cDNA 9230105E05 gene Neighboring gene high mobility group AT-hook 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Clone Names

    • MGC117871

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    basal RNA polymerase II transcription machinery binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    basal RNA polymerase II transcription machinery binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    dendrite extension IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    dendrite extension IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of dendritic spine development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025431.2NP_079707.1  protein LLP homolog

      See identical proteins and their annotated locations for NP_079707.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004503
      Consensus CDS
      CCDS24206.1
      UniProtKB/Swiss-Prot
      Q9D945
      UniProtKB/TrEMBL
      D3YXW1
      Related
      ENSMUSP00000020444.8, OTTMUSP00000043279, ENSMUST00000020444.15, OTTMUST00000081049
      Conserved Domains (1) summary
      pfam10169
      Location:3121
      Laps; Learning-associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      120227060..120232071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513954.1XP_006514017.1  protein LLP homolog isoform X1

      See identical proteins and their annotated locations for XP_006514017.1

      UniProtKB/Swiss-Prot
      Q9D945
      UniProtKB/TrEMBL
      D3YXW1
      Related
      ENSMUSP00000118254.2, OTTMUSP00000043280, ENSMUST00000130198.2, OTTMUST00000081050
      Conserved Domains (1) summary
      pfam10169
      Location:3121
      Laps; Learning-associated protein
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