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    Llph LLP homolog, long-term synaptic facilitation (Aplysia) [ Mus musculus (house mouse) ]

    Gene ID: 66225, updated on 23-Jun-2021

    Summary

    Official Symbol
    Llphprovided by MGI
    Official Full Name
    LLP homolog, long-term synaptic facilitation (Aplysia)provided by MGI
    Primary source
    MGI:MGI:1913475
    See related
    Ensembl:ENSMUSG00000020224
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1190005P17Rik
    Expression
    Broad expression in liver E14 (RPKM 29.1), CNS E11.5 (RPKM 23.5) and 21 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Llph in Genome Data Viewer
    Location:
    10; 10 D2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (120062953..120067976)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (120227048..120232071)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (119664116..119669126)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene interleukin-1 receptor-associated kinase 3 Neighboring gene predicted gene, 38500 Neighboring gene transmembrane BAX inhibitor motif containing 4 Neighboring gene predicted gene, 40782 Neighboring gene RIKEN cDNA 9230105E05 gene Neighboring gene predicted gene, 40783 Neighboring gene high mobility group AT-hook 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Clone Names

    • MGC117871

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables basal RNA polymerase II transcription machinery binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables basal RNA polymerase II transcription machinery binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in dendrite extension IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in dendrite extension IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of dendritic spine development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025431.2NP_079707.1  protein LLP homolog

      See identical proteins and their annotated locations for NP_079707.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004503
      Consensus CDS
      CCDS24206.1
      UniProtKB/Swiss-Prot
      Q9D945
      UniProtKB/TrEMBL
      D3YXW1
      Related
      ENSMUSP00000020444.9, ENSMUST00000020444.16
      Conserved Domains (1) summary
      pfam10169
      Location:3121
      Laps; Learning-associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      120062953..120067976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513954.2XP_006514017.1  protein LLP homolog isoform X1

      See identical proteins and their annotated locations for XP_006514017.1

      UniProtKB/Swiss-Prot
      Q9D945
      UniProtKB/TrEMBL
      D3YXW1
      Related
      ENSMUSP00000118254.3, ENSMUST00000130198.3
      Conserved Domains (1) summary
      pfam10169
      Location:3121
      Laps; Learning-associated protein
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