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    Mrpl4 mitochondrial ribosomal protein L4 [ Mus musculus (house mouse) ]

    Gene ID: 66163, updated on 9-Sep-2018

    Summary

    Official Symbol
    Mrpl4provided by MGI
    Official Full Name
    mitochondrial ribosomal protein L4provided by MGI
    Primary source
    MGI:MGI:2137210
    See related
    Ensembl:ENSMUSG00000003299 Vega:OTTMUSG00000063045
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110017G11Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 78.0), kidney adult (RPKM 50.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Mrpl4 in Genome Data Viewer
    Location:
    9; 9 A3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (21002605..21008839)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (20807181..20813283)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene DNA methyltransferase (cytosine-5) 1 Neighboring gene microRNA 7081 Neighboring gene sphingosine-1-phosphate receptor 2 Neighboring gene intercellular adhesion molecule 1 Neighboring gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    39S ribosomal protein L4, mitochondrial
    Names
    L4mt
    MRP-L4
    NP_075656.2
    XP_006510602.1
    XP_006510603.1
    XP_017168998.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357899.1NP_001344828.1  39S ribosomal protein L4, mitochondrial isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC159314
      Conserved Domains (1) summary
      pfam00573
      Location:81278
      Ribosomal_L4; Ribosomal protein L4/L1 family
    2. NM_023167.2NP_075656.2  39S ribosomal protein L4, mitochondrial isoform 2

      See identical proteins and their annotated locations for NP_075656.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses two alternate splice junctions compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC159314, AK002464, BC051685
      Consensus CDS
      CCDS40548.1
      UniProtKB/Swiss-Prot
      Q9DCU6
      Related
      ENSMUSP00000003386.5, OTTMUSP00000079411, ENSMUST00000003386.6, OTTMUST00000153443
      Conserved Domains (1) summary
      pfam00573
      Location:81272
      Ribosomal_L4; Ribosomal protein L4/L1 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      21002605..21008839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510539.1XP_006510602.1  39S ribosomal protein L4, mitochondrial isoform X1

      Related
      ENSMUSP00000150112.1, OTTMUSP00000079414, ENSMUST00000214124.1, OTTMUST00000153448
      Conserved Domains (1) summary
      pfam00573
      Location:81278
      Ribosomal_L4; Ribosomal protein L4/L1 family
    2. XM_006510540.1XP_006510603.1  39S ribosomal protein L4, mitochondrial isoform X2

      Conserved Domains (1) summary
      pfam00573
      Location:81266
      Ribosomal_L4; Ribosomal protein L4/L1 family
    3. XM_017313509.1XP_017168998.1  39S ribosomal protein L4, mitochondrial isoform X3

    RNA

    1. XR_001778961.1 RNA Sequence

    2. XR_379129.1 RNA Sequence

    3. XR_001778962.1 RNA Sequence

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