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    Necap2 NECAP endocytosis associated 2 [ Mus musculus (house mouse) ]

    Gene ID: 66147, updated on 31-Jan-2019

    Summary

    Official Symbol
    Necap2provided by MGI
    Official Full Name
    NECAP endocytosis associated 2provided by MGI
    Primary source
    MGI:MGI:1913397
    See related
    Ensembl:ENSMUSG00000028923
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C78898; NECAP-2; AA409105; 1110005F07Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 27.4), liver E14.5 (RPKM 25.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Necap2 in Genome Data Viewer
    Location:
    4; 4 D3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (141066512..141078358, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (140622427..140634260, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene microfibrillar-associated protein 2 Neighboring gene ciliary rootlet coiled-coil, rootletin Neighboring gene ribosomal protein S2 pseudogene Neighboring gene spermatogenesis associated 21

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    endocytosis IEA
    Inferred from Electronic Annotation
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    clathrin vesicle coat IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    clathrin vesicle coat IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    adaptin ear-binding coat-associated protein 2
    Names
    NECAP endocytosis-associated protein 2
    clathrin-coated vesicle coat protein
    likely ortholog of H. sapiens adaptin-ear-binding coat-associated protein 2 (NECAP2)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025383.4NP_079659.1  adaptin ear-binding coat-associated protein 2

      See identical proteins and their annotated locations for NP_079659.1

      Status: VALIDATED

      Source sequence(s)
      AI840582, AK155871, BY159605
      Consensus CDS
      CCDS18862.1
      UniProtKB/Swiss-Prot
      Q9D1J1
      Related
      ENSMUSP00000030760.8, ENSMUST00000030760.14
      Conserved Domains (1) summary
      pfam07933
      Location:6162
      DUF1681; Protein of unknown function (DUF1681)

    RNA

    1. NR_149724.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI840582, AK155871, BU054659, BY159605

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      141066512..141078358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001784177.1 RNA Sequence

      Related
      ENSMUST00000132906.7
    2. XR_001784178.1 RNA Sequence

    3. XR_390777.3 RNA Sequence

    4. XR_001784179.1 RNA Sequence

      Related
      ENSMUST00000152915.7
    5. XR_881436.1 RNA Sequence

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