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    Elof1 ELF1 homolog, elongation factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 66126, updated on 2-Oct-2018

    Summary

    Official Symbol
    Elof1provided by MGI
    Official Full Name
    ELF1 homolog, elongation factor 1provided by MGI
    Primary source
    MGI:MGI:1913376
    See related
    Ensembl:ENSMUSG00000013822 Vega:OTTMUSG00000062333
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110011K10Rik
    Expression
    Broad expression in testis adult (RPKM 245.4), ovary adult (RPKM 51.3) and 27 other tissues See more
    Orthologs

    Genomic context

    See Elof1 in Genome Data Viewer
    Location:
    9; 9 A3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (22112986..22117204, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (21917433..21918613, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene predicted gene 6581 Neighboring gene calponin 1 Neighboring gene microRNA 7084 Neighboring gene acid phosphatase 5, tartrate resistant Neighboring gene predicted gene, 39306

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA polymerase II complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    chromatin-mediated maintenance of transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription elongation from RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription elongation factor 1 homolog
    Names
    elongation factor 1 homolog (ELF1, S. cerevisiae)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357309.1NP_001344238.1  transcription elongation factor 1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All seven variants encode the same protein.
      Source sequence(s)
      AC163623, BU583434
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    2. NM_001357310.1NP_001344239.1  transcription elongation factor 1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All seven variants encode the same protein.
      Source sequence(s)
      AC163623, DV649291
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    3. NM_001357311.1NP_001344240.1  transcription elongation factor 1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All seven variants encode the same protein.
      Source sequence(s)
      AC163623, AK003614
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    4. NM_001357312.1NP_001344241.1  transcription elongation factor 1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. All seven variants encode the same protein.
      Source sequence(s)
      AC163623
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    5. NM_001357313.1NP_001344242.1  transcription elongation factor 1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. All seven variants encode the same protein.
      Source sequence(s)
      AC163623
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    6. NM_001357314.1NP_001344243.1  transcription elongation factor 1 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. All seven variants encode the same protein.
      Source sequence(s)
      AC163623
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    7. NM_170777.4NP_740747.1  transcription elongation factor 1 homolog

      See identical proteins and their annotated locations for NP_740747.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All seven variants encode the same protein.
      Source sequence(s)
      AC163623
      Consensus CDS
      CCDS40559.1
      UniProtKB/Swiss-Prot
      P60003
      UniProtKB/TrEMBL
      Q545S6
      Related
      ENSMUSP00000128173.1, OTTMUSP00000078835, ENSMUST00000166335.1
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      22112986..22117204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313506.1XP_017168995.1  transcription elongation factor 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      P60003
      UniProtKB/TrEMBL
      Q545S6
      Related
      ENSMUSP00000013966.6, OTTMUSP00000078836, ENSMUST00000013966.7, OTTMUST00000152048
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    2. XM_017313507.1XP_017168996.1  transcription elongation factor 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      P60003
      UniProtKB/TrEMBL
      Q545S6
      Related
      ENSMUSP00000150536.1, OTTMUSP00000078838, ENSMUST00000214394.1, OTTMUST00000152050
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
    3. XM_017313508.1XP_017168997.1  transcription elongation factor 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      P60003
      UniProtKB/TrEMBL
      Q545S6
      Related
      ENSMUSP00000150169.1, OTTMUSP00000078839, ENSMUST00000213233.1, OTTMUST00000152051
      Conserved Domains (1) summary
      pfam05129
      Location:2079
      Elf1; Transcription elongation factor Elf1 like
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