Format

Send to:

Choose Destination
    • Showing Current items.

    Emc3 ER membrane protein complex subunit 3 [ Mus musculus (house mouse) ]

    Gene ID: 66087, updated on 9-Oct-2018

    Summary

    Official Symbol
    Emc3provided by MGI
    Official Full Name
    ER membrane protein complex subunit 3provided by MGI
    Primary source
    MGI:MGI:1913337
    See related
    Ensembl:ENSMUSG00000030286 Vega:OTTMUSG00000023489
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pob; Tmem111; AI225901; AW260416; 0610039A15Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 30.4), subcutaneous fat pad adult (RPKM 27.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Emc3 in Genome Data Viewer
    Location:
    6; 6 E3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (113514887..113531638, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (113464881..113481632, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene proline-rich transmembrane protein 3 Neighboring gene Fanconi anemia, complementation group D2 Neighboring gene predicted gene, 46971 Neighboring gene Fancd2 opposite strand

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    protein folding in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    ER membrane protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ER membrane protein complex ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ER membrane protein complex subunit 3
    Names
    partial optokinetic response b
    transmembrane protein 111

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175101.3NP_780310.1  ER membrane protein complex subunit 3

      See identical proteins and their annotated locations for NP_780310.1

      Status: PROVISIONAL

      Source sequence(s)
      AK075595
      Consensus CDS
      CCDS20425.1
      UniProtKB/Swiss-Prot
      Q99KI3
      Related
      ENSMUSP00000032425.5, OTTMUSP00000027555, ENSMUST00000032425.6, OTTMUST00000057169
      Conserved Domains (1) summary
      pfam01956
      Location:5188
      DUF106; Integral membrane protein DUF106

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      113514887..113531638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center