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    Cwc15 CWC15 spliceosome-associated protein [ Mus musculus (house mouse) ]

    Gene ID: 66070, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cwc15provided by MGI
    Official Full Name
    CWC15 spliceosome-associated proteinprovided by MGI
    Primary source
    MGI:MGI:1913320
    See related
    Ensembl:ENSMUSG00000004096
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ed1; mED1; c11orf5; 0610040D20Rik; 2900052N06Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 41.8), bladder adult (RPKM 30.3) and 22 other tissues See more
    Orthologs
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    Genomic context

    See Cwc15 in Genome Data Viewer
    Location:
    9; 9 A2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (14411876..14421920)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (14500604..14510620)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (14305063..14315064)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene lysine (K)-specific demethylase 4D-like Neighboring gene lysine (K)-specific demethylase 4D Neighboring gene angiomotin-like 1 Neighboring gene predicted gene, 34263 Neighboring gene predicted gene 7607

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA cis splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of U2-type catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    spliceosome-associated protein CWC15 homolog
    Names
    CWC15 homolog
    embryonic development factor 1
    nucleoporin
    protein CWC15 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023153.3NP_075642.1  spliceosome-associated protein CWC15 homolog

      See identical proteins and their annotated locations for NP_075642.1

      Status: VALIDATED

      Source sequence(s)
      AK002864, BQ840384, CT485607
      Consensus CDS
      CCDS22823.1
      UniProtKB/Swiss-Prot
      Q9JHS9
      Related
      ENSMUSP00000004200.9, ENSMUST00000004200.9
      Conserved Domains (1) summary
      pfam04889
      Location:1228
      Cwf_Cwc_15; Cwf15/Cwc15 cell cycle control protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      14411876..14421920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510537.4XP_006510600.1  spliceosome-associated protein CWC15 homolog isoform X1

      See identical proteins and their annotated locations for XP_006510600.1

      UniProtKB/Swiss-Prot
      Q9JHS9
      Related
      ENSMUSP00000149476.2, ENSMUST00000213913.2
      Conserved Domains (1) summary
      pfam04889
      Location:1228
      Cwf_Cwc_15; Cwf15/Cwc15 cell cycle control protein
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