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    0610009B22Rik RIKEN cDNA 0610009B22 gene [ Mus musculus (house mouse) ]

    Gene ID: 66050, updated on 26-Jun-2021

    Summary

    Official Symbol
    0610009B22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 0610009B22 geneprovided by MGI
    Primary source
    MGI:MGI:1913300
    See related
    Ensembl:ENSMUSG00000007777
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in testis adult (RPKM 9.5), CNS E14 (RPKM 9.3) and 28 other tissues See more
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    Genomic context

    See 0610009B22Rik in Genome Data Viewer
    Location:
    11; 11 B1.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (51576207..51579933, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (51685380..51689104, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (51498887..51502136, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D930048N14 gene Neighboring gene NEDD4 binding protein 3 Neighboring gene predicted gene, 30058 Neighboring gene Sec24 related gene family, member A (S. cerevisiae) Neighboring gene predicted gene, 25291 Neighboring gene secretion associated Ras related GTPase 1B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transmembrane transporter binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in skeletal system development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of TRAPP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of TRAPP complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    Trafficking protein particle complex subunit 2-like; uncharacterized protein LOC66050

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025319.2NP_079595.1  Trafficking protein particle complex subunit 2-like

      See identical proteins and their annotated locations for NP_079595.1

      Status: PROVISIONAL

      Source sequence(s)
      AK002369
      Consensus CDS
      CCDS36149.1
      UniProtKB/Swiss-Prot
      Q9CQP2
      UniProtKB/TrEMBL
      Q8R3W2
      Related
      ENSMUSP00000007921.3, ENSMUST00000007921.9
      Conserved Domains (1) summary
      cd14825
      Location:4138
      TRAPPC2_sedlin; Trafficking protein particle complex subunit 2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      51576207..51579933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533917.5XP_006533980.1  uncharacterized protein LOC66050 isoform X1

      See identical proteins and their annotated locations for XP_006533980.1

      UniProtKB/Swiss-Prot
      Q9CQP2
      UniProtKB/TrEMBL
      Q8R3W2
      Conserved Domains (1) summary
      cd14825
      Location:4138
      TRAPPC2_sedlin; Trafficking protein particle complex subunit 2
    2. XM_006533918.3XP_006533981.1  uncharacterized protein LOC66050 isoform X1

      See identical proteins and their annotated locations for XP_006533981.1

      UniProtKB/Swiss-Prot
      Q9CQP2
      UniProtKB/TrEMBL
      Q8R3W2
      Related
      ENSMUSP00000104726.2, ENSMUST00000109098.2
      Conserved Domains (1) summary
      cd14825
      Location:4138
      TRAPPC2_sedlin; Trafficking protein particle complex subunit 2
    3. XM_006533919.3XP_006533982.1  uncharacterized protein LOC66050 isoform X1

      See identical proteins and their annotated locations for XP_006533982.1

      UniProtKB/Swiss-Prot
      Q9CQP2
      UniProtKB/TrEMBL
      Q8R3W2
      Conserved Domains (1) summary
      cd14825
      Location:4138
      TRAPPC2_sedlin; Trafficking protein particle complex subunit 2
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