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    AFDN-DT AFDN divergent transcript [ Homo sapiens (human) ]

    Gene ID: 653483, updated on 23-Nov-2021

    Summary

    Official Symbol
    AFDN-DTprovided by HGNC
    Official Full Name
    AFDN divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:21236
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HGC6.4; AFDN-AS1; C6orf124; MLLT4-AS1; dJ431P23.3
    Expression
    Broad expression in prostate (RPKM 1.2), testis (RPKM 1.0) and 22 other tissues See more
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    Genomic context

    See AFDN-DT in Genome Data Viewer
    Location:
    6q27
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (167823890..167826796, complement)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (168224570..168227476, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene serine palmitoyltransferase long chain base subunit 2 pseudogene Neighboring gene long intergenic non-protein coding RNA 1558 Neighboring gene uncharacterized LOC441179 Neighboring gene afadin, adherens junction formation factor Neighboring gene Sharpr-MPRA regulatory region 4710 Neighboring gene uncharacterized LOC107986673

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Other Names

    • AFDN antisense RNA 1 (head to head)
    • MLLT4 antisense RNA 1 (head to head)
    • MLLT4 antisense RNA 1 (non-protein coding)

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027906.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB016898, DC331926, DC427335

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

      Range
      167823890..167826796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001042508.3: Suppressed sequence

      Description
      NM_001042508.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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