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    Arl6ip4 ADP-ribosylation factor-like 6 interacting protein 4 [ Mus musculus (house mouse) ]

    Gene ID: 65105, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arl6ip4provided by MGI
    Official Full Name
    ADP-ribosylation factor-like 6 interacting protein 4provided by MGI
    Primary source
    MGI:MGI:1929500
    See related
    Ensembl:ENSMUSG00000029404
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Aip-4; Srp25; AA408210; AA408365
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 41.0), liver E14 (RPKM 31.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arl6ip4 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (124116108..124118195)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (124566117..124568204)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 9 Neighboring gene predicted gene 16001 Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain containing 2 Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2 Neighboring gene predicted gene, 34166 Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 6-interacting protein 4
    Names
    ADP-ribosylation-like factor 6 interacting protein 4
    ARL-6-interacting protein 4
    SRp25 nuclear protein
    splicing factor SRrp37

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144509.2NP_653092.1  ADP-ribosylation factor-like protein 6-interacting protein 4

      See identical proteins and their annotated locations for NP_653092.1

      Status: PROVISIONAL

      Source sequence(s)
      AC113474
      Consensus CDS
      CCDS19673.1
      UniProtKB/Swiss-Prot
      Q9JM93
      Related
      ENSMUSP00000031351.4, ENSMUST00000031351.10
      Conserved Domains (1) summary
      pfam10500
      Location:24227
      SR-25; Nuclear RNA-splicing-associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      124116108..124118195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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