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    Pes1 pescadillo ribosomal biogenesis factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 64934, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pes1provided by MGI
    Official Full Name
    pescadillo ribosomal biogenesis factor 1provided by MGI
    Primary source
    MGI:MGI:1890613
    See related
    Ensembl:ENSMUSG00000020430
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 25.3), placenta adult (RPKM 24.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Pes1 in Genome Data Viewer
    Location:
    11; 11 A1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3913975..3930004)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3963975..3980004)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (3863978..3880007)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene transcobalamin 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene predicted gene, 46265 Neighboring gene predicted gene 11954

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of PeBoW complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of PeBoW complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of PeBoW complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in condensed chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of preribosome, large subunit precursor ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    pescadillo homolog
    Names
    pescadillo homolog 1, containing BRCT domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022889.3NP_075027.1  pescadillo homolog

      See identical proteins and their annotated locations for NP_075027.1

      Status: PROVISIONAL

      Source sequence(s)
      AL807395
      Consensus CDS
      CCDS24372.1
      UniProtKB/Swiss-Prot
      Q9EQ61
      Related
      ENSMUSP00000020705.5, ENSMUST00000020705.5
      Conserved Domains (3) summary
      COG5163
      Location:6566
      NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
      pfam06732
      Location:9278
      Pescadillo_N; Pescadillo N-terminus
      pfam16589
      Location:327413
      BRCT_2; BRCT domain, a BRCA1 C-terminus domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      3913975..3930004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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