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    PNMA6E PNMA family member 6E [ Homo sapiens (human) ]

    Gene ID: 649238, updated on 17-Jun-2024

    Summary

    Official Symbol
    PNMA6Eprovided by HGNC
    Official Full Name
    PNMA family member 6Eprovided by HGNC
    Primary source
    HGNC:HGNC:50767
    See related
    Ensembl:ENSG00000214897 AllianceGenome:HGNC:50767
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Orthologs
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    Genomic context

    See PNMA6E in Genome Data Viewer
    Location:
    Xq28
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (153395639..153414004, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (151669233..151687464, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (152661097..152666808, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene zinc finger protein 275 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC105373378 Neighboring gene uncharacterized LOC105373379 Neighboring gene RNA, 7SL, cytoplasmic 667, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21061 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21062 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:152677238-152677448 Neighboring gene ZFP92 zinc finger protein Neighboring gene three prime repair exonuclease 2 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:152726424-152726582 Neighboring gene HAUS augmin like complex subunit 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30034 Neighboring gene Sharpr-MPRA regulatory region 9358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:152741433-152741972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:152742168-152742668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:152742669-152743169 Neighboring gene extracellular matrix protein X-linked, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    paraneoplastic antigen Ma6E
    Names
    paraneoplastic Ma antigen family member 6E
    putative paraneoplastic antigen-like protein 6B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001351293.2NP_001338222.1  paraneoplastic antigen Ma6E isoform 1

      Status: VALIDATED

      Source sequence(s)
      BX111592, BX469942, HY005619, U82695
      Consensus CDS
      CCDS87793.1
      UniProtKB/TrEMBL
      A0A0J9YXH5
      Related
      ENSP00000488404.1, ENST00000633844.1
      Conserved Domains (1) summary
      pfam14893
      Location:1206
      PNMA
    2. NM_001351294.2NP_001338223.1  paraneoplastic antigen Ma6E isoform 1

      Status: VALIDATED

      Source sequence(s)
      BX111592, BX469942, HY031436, U82695
      Consensus CDS
      CCDS87793.1
      UniProtKB/TrEMBL
      A0A0J9YXH5
      Conserved Domains (1) summary
      pfam14893
      Location:1206
      PNMA
    3. NM_001367770.1NP_001354699.1  paraneoplastic antigen Ma6E isoform 2

      Status: VALIDATED

      Source sequence(s)
      BX469942, HY051803, HY237141, U82695
      Consensus CDS
      CCDS94694.1
      UniProtKB/Swiss-Prot
      A0A0J9YXQ4
      Related
      ENSP00000488500.1, ENST00000445091.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      153395639..153414004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047442374.1XP_047298330.1  paraneoplastic antigen Ma6E isoform X1

      UniProtKB/Swiss-Prot
      A0A0J9YXQ4

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      151669233..151687464 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054327593.1XP_054183568.1  paraneoplastic antigen Ma6E isoform X1