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    ARMCX5 armadillo repeat containing X-linked 5 [ Homo sapiens (human) ]

    Gene ID: 64860, updated on 23-Nov-2021

    Summary

    Official Symbol
    ARMCX5provided by HGNC
    Official Full Name
    armadillo repeat containing X-linked 5provided by HGNC
    Primary source
    HGNC:HGNC:25772
    See related
    Ensembl:ENSG00000125962 MIM:301047
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GASP5
    Expression
    Ubiquitous expression in thyroid (RPKM 7.2), prostate (RPKM 6.6) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See ARMCX5 in Genome Data Viewer
    Location:
    Xq22.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (102599206..102604159)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (101854134..101859087)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene nuclear RNA export factor 5 pseudogene Neighboring gene forkhead box N3 pseudogene 1 Neighboring gene ARMCX5-GPRASP2 readthrough Neighboring gene nuclear RNA export factor 4 pseudogene Neighboring gene H3 histone pseudogene 45 Neighboring gene G protein-coupled receptor associated sorting protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough ARMCX5-GPRASP2

    Readthrough gene: ARMCX5-GPRASP2, Included gene: GPRASP1, Included gene: BHLHB9, Included gene: GPRASP2, Included gene: LINC00630

    Homology

    Clone Names

    • FLJ12969, FLJ13382, DKFZp686A22185

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    armadillo repeat-containing X-linked protein 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016347.1 RefSeqGene

      Range
      5348..9992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001168478.2NP_001161950.1  armadillo repeat-containing X-linked protein 5

      See identical proteins and their annotated locations for NP_001161950.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
      Source sequence(s)
      AL537480, BC064983
      Consensus CDS
      CCDS14500.1
      UniProtKB/Swiss-Prot
      Q6P1M9
      Related
      ENSP00000473737.2, ENST00000473968.6
      Conserved Domains (1) summary
      pfam04826
      Location:300552
      Arm_2; Armadillo-like
    2. NM_001168479.2NP_001161951.1  armadillo repeat-containing X-linked protein 5

      See identical proteins and their annotated locations for NP_001161951.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1-6 all encode the same protein.
      Source sequence(s)
      AK096692, BC000792, BI765968
      Consensus CDS
      CCDS14500.1
      UniProtKB/Swiss-Prot
      Q6P1M9
      Conserved Domains (1) summary
      pfam04826
      Location:300552
      Arm_2; Armadillo-like
    3. NM_001168480.2NP_001161952.1  armadillo repeat-containing X-linked protein 5

      See identical proteins and their annotated locations for NP_001161952.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
      Source sequence(s)
      AK096692, BC000792
      Consensus CDS
      CCDS14500.1
      UniProtKB/Swiss-Prot
      Q6P1M9
      Related
      ENSP00000246174.2, ENST00000246174.6
      Conserved Domains (1) summary
      pfam04826
      Location:300552
      Arm_2; Armadillo-like
    4. NM_001168482.2NP_001161954.1  armadillo repeat-containing X-linked protein 5

      See identical proteins and their annotated locations for NP_001161954.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
      Source sequence(s)
      BC064983, BX352705
      Consensus CDS
      CCDS14500.1
      UniProtKB/Swiss-Prot
      Q6P1M9
      Related
      ENSP00000474484.2, ENST00000477663.6
      Conserved Domains (1) summary
      pfam04826
      Location:300552
      Arm_2; Armadillo-like
    5. NM_001168485.2NP_001161957.1  armadillo repeat-containing X-linked protein 5

      See identical proteins and their annotated locations for NP_001161957.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
      Source sequence(s)
      AK096692, BC064983, DN991222
      Consensus CDS
      CCDS14500.1
      UniProtKB/Swiss-Prot
      Q6P1M9
      Conserved Domains (1) summary
      pfam04826
      Location:300552
      Arm_2; Armadillo-like
    6. NM_022838.4NP_073749.2  armadillo repeat-containing X-linked protein 5

      See identical proteins and their annotated locations for NP_073749.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same protein.
      Source sequence(s)
      BC064983
      Consensus CDS
      CCDS14500.1
      UniProtKB/Swiss-Prot
      Q6P1M9
      Related
      ENSP00000474470.2, ENST00000479502.2
      Conserved Domains (1) summary
      pfam04826
      Location:300552
      Arm_2; Armadillo-like

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

      Range
      102599206..102604159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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