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    GOLGA6L10 golgin A6 family like 10 [ Homo sapiens (human) ]

    Gene ID: 647042, updated on 12-Sep-2024

    Summary

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    Official Symbol
    GOLGA6L10provided by HGNC
    Official Full Name
    golgin A6 family like 10provided by HGNC
    Primary source
    HGNC:HGNC:37228
    See related
    Ensembl:ENSG00000278662 AllianceGenome:HGNC:37228
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GOLGA6L18
    Expression
    Broad expression in testis (RPKM 11.0), skin (RPKM 5.4) and 24 other tissues See more
    Orthologs
    all
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    Genomic context

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    Location:
    15q25.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82339993..82349475, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80204113..80213595, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (82632347..82641706, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ADAMTS7 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82611132-82611632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82611633-82612133 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82621782-82622282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82622283-82622783 Neighboring gene dynamin 1 pseudogene 43 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82798244-82798745 Neighboring gene UBE2Q2 pseudogene 2 Neighboring gene ribosomal protein L9 pseudogene 8 Neighboring gene golgin A6 family like 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Non-erythroid beta spectrin interacting proteins and their effects on spectrin tetramerization. Sevinc A, et al. Cell Mol Biol Lett, 2011 Dec. PMID 21866423, Free PMC Article
    2. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
    3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ61456, DKFZp686L1223

    General protein information

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    Preferred Names
    golgin subfamily A member 6-like protein 10
    Names
    golgi autoantigen, golgin subfamily a, 6-like 10
    golgin A6 family-like 18
    putative golgin subfamily A member 6-like protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164465.3 → NP_001157937.2  golgin subfamily A member 6-like protein 10 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC243919
      Consensus CDS
      CCDS45325.2
      UniProtKB/Swiss-Prot
      A0A087WVD5, A6NI86, D6RB28
      UniProtKB/TrEMBL
      A0A0J9YW09
      Related
      ENSP00000479362.1, ENST00000610657.2
      Conserved Domains (1) summary
      pfam15070
      Location:83 → 219
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

    2. NM_001322400.1 → NP_001309329.1  golgin subfamily A member 6-like protein 10 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents an alternate allele located on the reference alternate locus, ALT_REF_LOCI_1.
      Source sequence(s)
      AC126339
      UniProtKB/Swiss-Prot
      H0YKK7
      UniProtKB/TrEMBL
      A0A0M3HER8
      Conserved Domains (1) summary
      pfam15070
      Location:83 → 219
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      82339993..82349475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      52777..59552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      80204113..80213595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_006147.1: Suppressed sequence

      Description
      NG_006147.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6NI86.4 GenPept UniProtKB/Swiss-Prot:A6NI86

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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