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    AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 [ Homo sapiens (human) ]

    Gene ID: 642517, updated on 23-Nov-2021

    Summary

    Official Symbol
    AGAP9provided by HGNC
    Official Full Name
    ArfGAP with GTPase domain, ankyrin repeat and PH domain 9provided by HGNC
    Primary source
    HGNC:HGNC:23463
    See related
    Ensembl:ENSG00000204172
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AGAP-9; CTGLF6; bA301J7.2
    Expression
    Ubiquitous expression in testis (RPKM 15.8), skin (RPKM 15.2) and 25 other tissues See more
    Orthologs
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    Genomic context

    See AGAP9 in Genome Data Viewer
    Location:
    10q11.22
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (47501854..47523638, complement)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (48215724..48237508)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107001062 Neighboring gene uncharacterized LOC105378292 Neighboring gene BMS1P2-AGAP9 readthrough Neighboring gene annexin A8 Neighboring gene uncharacterized LOC107987147 Neighboring gene family with sequence similarity 25 member G Neighboring gene RNA, 5S ribosomal pseudogene 312 Neighboring gene BMS1 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough BMS1P2-AGAP9

    Readthrough gene: BMS1P2-AGAP9, Included gene: BMS1P2

    Homology

    Clone Names

    • FLJ00312, FLJ39589, FLJ99065

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9
    Names
    centaurin-gamma-like family member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001190810.1NP_001177739.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      BC171845, BC171847
      Consensus CDS
      CCDS73125.1
      UniProtKB/Swiss-Prot
      Q5VTM2
      Related
      ENSP00000392206.2, ENST00000452145.6
      Conserved Domains (6) summary
      cd01250
      Location:280444
      PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
      pfam00023
      Location:623643
      Ank; Ankyrin repeat
      pfam00169
      Location:283442
      PH; PH domain
      pfam01412
      Location:466580
      ArfGap; Putative GTPase activating protein for Arf
      pfam12796
      Location:596643
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:591621
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

      Range
      47501854..47523638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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