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    C130026I21Rik RIKEN cDNA C130026I21 gene [ Mus musculus (house mouse) ]

    Gene ID: 620078, updated on 23-Jun-2021

    Summary

    Official Symbol
    C130026I21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C130026I21 geneprovided by MGI
    Primary source
    MGI:MGI:3612702
    See related
    Ensembl:ENSMUSG00000052477
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930565N07Rik
    Expression
    Biased expression in bladder adult (RPKM 4.9), spleen adult (RPKM 1.8) and 5 other tissues See more
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    Genomic context

    See C130026I21Rik in Genome Data Viewer
    Location:
    1; 1 C5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85219007..85260602, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85241286..85282883, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (85242919..85267141, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38510 Neighboring gene predicted gene, 53253 Neighboring gene predicted gene, 53568 Neighboring gene predicted pseudogene 7609 Neighboring gene sp110 nuclear body protein-like Neighboring gene predicted gene, 53567 Neighboring gene component of Sp100-rs-like Neighboring gene predicted gene 7592 Neighboring gene predicted gene 7281

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    SP140 nuclear body protein family member

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037909.3NP_001032998.2  SP140 nuclear body protein family member isoform 2

      See identical proteins and their annotated locations for NP_001032998.2

      Status: VALIDATED

      Source sequence(s)
      AC123856, AK047983, AK163341
      Consensus CDS
      CCDS15109.1
      UniProtKB/TrEMBL
      Q3KNJ6, Q3TQS4, Q8C898
      Related
      ENSMUSP00000066587.9, ENSMUST00000064341.9
      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    2. NM_175219.3NP_780428.1  SP140 nuclear body protein family member isoform 1

      See identical proteins and their annotated locations for NP_780428.1

      Status: VALIDATED

      Source sequence(s)
      AC123856, AK047983, AK163341
      Consensus CDS
      CCDS35636.1
      UniProtKB/TrEMBL
      Q3TQS4, Q8C898
      Related
      ENSMUSP00000091224.6, ENSMUST00000093506.12
      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      85219007..85260602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030255714.2XP_030111574.1  SP140 nuclear body protein family member isoform X3

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    2. XM_030255713.2XP_030111573.1  SP140 nuclear body protein family member isoform X3

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    3. XM_036152577.1XP_036008470.1  SP140 nuclear body protein family member isoform X5

      Conserved Domains (1) summary
      pfam03172
      Location:192
      HSR; HSR domain
    4. XM_036152576.1XP_036008469.1  SP140 nuclear body protein family member isoform X3

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    5. XM_036152575.1XP_036008468.1  SP140 nuclear body protein family member isoform X3

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    6. XM_036152578.1XP_036008471.1  SP140 nuclear body protein family member isoform X6

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    7. XM_017321880.3XP_017177369.1  SP140 nuclear body protein family member isoform X3

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    8. XM_006496512.5XP_006496575.1  SP140 nuclear body protein family member isoform X1

      Conserved Domains (1) summary
      pfam03172
      Location:39133
      HSR; HSR domain
    9. XM_017321879.3XP_017177368.1  SP140 nuclear body protein family member isoform X2

      Conserved Domains (1) summary
      pfam03172
      Location:39133
      HSR; HSR domain
    10. XM_006496519.5XP_006496582.1  SP140 nuclear body protein family member isoform X11

      Conserved Domains (1) summary
      pfam03172
      Location:39133
      HSR; HSR domain
    11. XM_017321881.3XP_017177370.1  SP140 nuclear body protein family member isoform X4

      Conserved Domains (1) summary
      pfam03172
      Location:39133
      HSR; HSR domain
    12. XM_017321884.3XP_017177373.1  SP140 nuclear body protein family member isoform X7

      Conserved Domains (1) summary
      pfam03172
      Location:39133
      HSR; HSR domain
    13. XM_017321885.3XP_017177374.1  SP140 nuclear body protein family member isoform X9

      Conserved Domains (1) summary
      pfam03172
      Location:39133
      HSR; HSR domain
    14. XM_036152583.1XP_036008476.1  SP140 nuclear body protein family member isoform X8

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
    15. XM_036152584.1XP_036008477.1  SP140 nuclear body protein family member isoform X10

      Conserved Domains (1) summary
      pfam03172
      Location:25119
      HSR; HSR domain
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