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    C130026I21Rik RIKEN cDNA C130026I21 gene [ Mus musculus (house mouse) ]

    Gene ID: 620078, updated on 31-Jan-2019

    Summary

    Official Symbol
    C130026I21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C130026I21 geneprovided by MGI
    Primary source
    MGI:MGI:3612702
    See related
    Ensembl:ENSMUSG00000052477
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930565N07Rik
    Expression
    Biased expression in bladder adult (RPKM 4.9), spleen adult (RPKM 1.8) and 5 other tissues See more

    Genomic context

    See C130026I21Rik in Genome Data Viewer
    Location:
    1; 1 C5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (85241286..85270866, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (85242919..85267141, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A530040E14 gene Neighboring gene nuclear body protein SP140-like protein Neighboring gene predicted gene, 46097 Neighboring gene predicted gene, 38510 Neighboring gene predicted pseudogene 7609 Neighboring gene component of Sp100-rs-like Neighboring gene component of Sp100-rs-like Neighboring gene predicted gene 7281

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    SP140 nuclear body protein family member

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037909.3NP_001032998.2  SP140 nuclear body protein family member isoform 2

      See identical proteins and their annotated locations for NP_001032998.2

      Status: VALIDATED

      Source sequence(s)
      AC123856, AK047983, AK163341
      Consensus CDS
      CCDS15109.1
      UniProtKB/TrEMBL
      Q3KNJ6, Q3TQS4, Q8C898
      Related
      ENSMUSP00000066587.8, ENSMUST00000064341.8
      Conserved Domains (1) summary
      pfam03172
      Location:28119
      Sp100; Sp100 domain
    2. NM_175219.3NP_780428.1  SP140 nuclear body protein family member isoform 1

      See identical proteins and their annotated locations for NP_780428.1

      Status: VALIDATED

      Source sequence(s)
      AC123856, AK047983, AK163341
      Consensus CDS
      CCDS35636.1
      UniProtKB/TrEMBL
      Q3TQS4, Q8C898
      Related
      ENSMUSP00000091224.5, ENSMUST00000093506.11
      Conserved Domains (2) summary
      pfam03172
      Location:28119
      Sp100; Sp100 domain
      pfam15317
      Location:138185
      Lbh; Cardiac transcription factor regulator, Developmental protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      85241286..85270866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496519.3XP_006496582.1  SP140 nuclear body protein family member isoform X8

      Conserved Domains (1) summary
      pfam03172
      Location:42133
      Sp100; Sp100 domain
    2. XM_017321882.1XP_017177371.1  SP140 nuclear body protein family member isoform X5

    3. XM_017321880.1XP_017177369.1  SP140 nuclear body protein family member isoform X3

    4. XM_017321879.1XP_017177368.1  SP140 nuclear body protein family member isoform X2

    5. XM_006496512.3XP_006496575.1  SP140 nuclear body protein family member isoform X1

      Conserved Domains (2) summary
      pfam03172
      Location:42133
      Sp100; Sp100 domain
      pfam15317
      Location:152199
      Lbh; Cardiac transcription factor regulator, Developmental protein
    6. XM_017321881.1XP_017177370.1  SP140 nuclear body protein family member isoform X4

    7. XM_017321885.1XP_017177374.1  SP140 nuclear body protein family member isoform X7

    8. XM_017321884.1XP_017177373.1  SP140 nuclear body protein family member isoform X6

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