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    Rcl1 RNA terminal phosphate cyclase-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 59028, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rcl1provided by MGI
    Official Full Name
    RNA terminal phosphate cyclase-like 1provided by MGI
    Primary source
    MGI:MGI:1913275
    See related
    Ensembl:ENSMUSG00000024785
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    R; RP; Rnac; RPCL1; C76567; AI789745; 2310040A02Rik
    Expression
    Ubiquitous expression in liver adult (RPKM 24.1), liver E18 (RPKM 16.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rcl1 in Genome Data Viewer
    Location:
    19; 19 C1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (29078761..29121251)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (29101375..29143851)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (29175865..29218333)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene adenylate kinase 3 Neighboring gene RIKEN cDNA 1700018L02 gene Neighboring gene predicted gene 9895 Neighboring gene microRNA 101b Neighboring gene predicted gene 5518 Neighboring gene predicted gene, 41829 Neighboring gene Janus kinase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    NOT enables RNA-3'-phosphate cyclase activity ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables endoribonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    RNA 3'-terminal phosphate cyclase-like protein
    Names
    RNA cyclase homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021525.2NP_067500.1  RNA 3'-terminal phosphate cyclase-like protein

      See identical proteins and their annotated locations for NP_067500.1

      Status: VALIDATED

      Source sequence(s)
      AK009709
      Consensus CDS
      CCDS29731.1
      UniProtKB/Swiss-Prot
      Q9JJT0
      Related
      ENSMUSP00000067579.6, ENSMUST00000064393.6
      Conserved Domains (2) summary
      cd00875
      Location:4343
      RNA_Cyclase_Class_I; RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are ...
      TIGR03400
      Location:8371
      18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      29078761..29121251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527246.5XP_006527309.1  RNA 3'-terminal phosphate cyclase-like protein isoform X1

      Conserved Domains (1) summary
      TIGR03400
      Location:17192
      18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1

    RNA

    1. XR_004940164.1 RNA Sequence

    2. XR_004940165.1 RNA Sequence

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