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    Nup160 nucleoporin 160 [ Mus musculus (house mouse) ]

    Gene ID: 59015, updated on 20-Jul-2021

    Summary

    Official Symbol
    Nup160provided by MGI
    Official Full Name
    nucleoporin 160provided by MGI
    Primary source
    MGI:MGI:1926227
    See related
    Ensembl:ENSMUSG00000051329
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gtl13; 160kDa; Gtl-13; Gtl1-1; Gtl1-13; AA414952; AU020188; mKIAA0197; 2810011M03Rik
    Expression
    Ubiquitous expression in liver E14 (RPKM 4.4), CNS E11.5 (RPKM 4.3) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Nup160 in Genome Data Viewer
    Location:
    2; 2 E1
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (90504405..90569671)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (90677215..90739327)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (90517372..90576485)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39870 Neighboring gene predicted gene, 39871 Neighboring gene predicted gene, 39872 Neighboring gene ribosomal protein L30, pseudogene 3 Neighboring gene formin binding protein 4 Neighboring gene ATP/GTP binding protein-like 2 Neighboring gene predicted gene 13772

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0197

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of nuclear pore IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables structural constituent of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in mRNA export from nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nephron development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    colocalizes_with kinetochore ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore outer ring ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nuclear pore complex protein Nup160
    Names
    160 kDa nucleoporin
    gene trap locus 1-13 protein
    gene trap locus-13
    nucleoporin 160kDa
    nucleoporin Nup160

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021512.2NP_067487.1  nuclear pore complex protein Nup160

      See identical proteins and their annotated locations for NP_067487.1

      Status: PROVISIONAL

      Source sequence(s)
      AL714026, AL935132
      Consensus CDS
      CCDS16413.1
      UniProtKB/Swiss-Prot
      Q9Z0W3
      Related
      ENSMUSP00000059289.7, ENSMUST00000057481.7
      Conserved Domains (1) summary
      pfam11715
      Location:28543
      Nup160; Nucleoporin Nup120/160

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      90504405..90569671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499968.5XP_006500031.1  nuclear pore complex protein Nup160 isoform X1

      See identical proteins and their annotated locations for XP_006500031.1

      UniProtKB/Swiss-Prot
      Q9Z0W3
      Conserved Domains (1) summary
      pfam11715
      Location:28543
      Nup160; Nucleoporin Nup120/160
    2. XM_030251919.2XP_030107779.1  nuclear pore complex protein Nup160 isoform X2

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