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    Rpl35a ribosomal protein L35A [ Mus musculus (house mouse) ]

    Gene ID: 57808, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rpl35aprovided by MGI
    Official Full Name
    ribosomal protein L35Aprovided by MGI
    Primary source
    MGI:MGI:1928894
    See related
    Ensembl:ENSMUSG00000060636 Vega:OTTMUSG00000024790
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rpl35; 2810431L15Rik
    Expression
    Broad expression in liver E14 (RPKM 309.5), bladder adult (RPKM 301.0) and 24 other tissues See more
    Orthologs

    Genomic context

    See Rpl35a in Genome Data Viewer
    Location:
    16; 16 B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (33056453..33060189)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (33056539..33060275)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 3 Neighboring gene predicted gene 6611 Neighboring gene IQ motif containing G Neighboring gene leishmanolysin-like (metallopeptidase M8 family) Neighboring gene microRNA 1947 Neighboring gene predicted gene, 38540

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ribonucleoprotein complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosomal large subunit biogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion HDA PubMed 
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130484.1NP_001123956.1  60S ribosomal protein L35a

      See identical proteins and their annotated locations for NP_001123956.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1.
      Source sequence(s)
      BB611247, CJ043213
      Consensus CDS
      CCDS28126.1
      UniProtKB/Swiss-Prot
      O55142
      UniProtKB/TrEMBL
      Q6ZWX1
      Related
      ENSMUSP00000110731.1, OTTMUSP00000029874, ENSMUST00000115079.7, OTTMUST00000061054
      Conserved Domains (1) summary
      pfam01247
      Location:5103
      Ribosomal_L35Ae; Ribosomal protein L35Ae
    2. NM_001130485.1NP_001123957.1  60S ribosomal protein L35a

      See identical proteins and their annotated locations for NP_001123957.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1.
      Source sequence(s)
      AK010692, BB611247, BU530423
      Consensus CDS
      CCDS28126.1
      UniProtKB/Swiss-Prot
      O55142
      UniProtKB/TrEMBL
      Q6ZWX1
      Related
      ENSMUSP00000077857.5, OTTMUSP00000029872, ENSMUST00000078804.11, OTTMUST00000061051
      Conserved Domains (1) summary
      pfam01247
      Location:5103
      Ribosomal_L35Ae; Ribosomal protein L35Ae
    3. NM_021338.3NP_067313.2  60S ribosomal protein L35a

      See identical proteins and their annotated locations for NP_067313.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AK028214, AV486753, BB611247
      Consensus CDS
      CCDS28126.1
      UniProtKB/Swiss-Prot
      O55142
      UniProtKB/TrEMBL
      Q6ZWX1
      Related
      ENSMUSP00000110730.1, OTTMUSP00000029873, ENSMUST00000115078.7, OTTMUST00000061052
      Conserved Domains (1) summary
      pfam01247
      Location:5103
      Ribosomal_L35Ae; Ribosomal protein L35Ae

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      33056453..33060189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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