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    Atp5mf ATP synthase membrane subunit f [ Mus musculus (house mouse) ]

    Gene ID: 57423, updated on 5-Mar-2024

    Summary

    Official Symbol
    Atp5mfprovided by MGI
    Official Full Name
    ATP synthase membrane subunit fprovided by MGI
    Primary source
    MGI:MGI:1927558
    See related
    Ensembl:ENSMUSG00000038690 AllianceGenome:MGI:1927558
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atp5j2; 1110019H14Rik
    Summary
    Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and skeleton. Orthologous to human ATP5MF (ATP synthase membrane subunit f). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in heart adult (RPKM 396.0), kidney adult (RPKM 214.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Atp5mf in Genome Data Viewer
    Location:
    5 G2; 5 85.09 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (145120514..145128351, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (145183704..145191541, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene STARR-positive B cell enhancer ABC_E6397 Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene zinc finger with KRAB and SCAN domains 14 Neighboring gene STARR-positive B cell enhancer ABC_E1316 Neighboring gene STARR-positive B cell enhancer ABC_E533 Neighboring gene zinc finger with KRAB and SCAN domains 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    General protein information

    Preferred Names
    ATP synthase subunit f, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f
    hypothetical protein, clone:2-31
    NP_065607.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020582.3NP_065607.1  ATP synthase subunit f, mitochondrial

      See identical proteins and their annotated locations for NP_065607.1

      Status: VALIDATED

      Source sequence(s)
      AC127411
      Consensus CDS
      CCDS39385.1
      UniProtKB/Swiss-Prot
      P56135, Q3THX9, Q9JMF4
      UniProtKB/TrEMBL
      F8WHP8
      Related
      ENSMUSP00000125504.2, ENSMUST00000161741.8
      Conserved Domains (1) summary
      pfam10206
      Location:884
      WRW; Mitochondrial F1F0-ATP synthase, subunit f

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      145120514..145128351 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)