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    Slc25a20 solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20 [ Mus musculus (house mouse) ]

    Gene ID: 57279, updated on 9-Sep-2018

    Summary

    Official Symbol
    Slc25a20provided by MGI
    Official Full Name
    solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20provided by MGI
    Primary source
    MGI:MGI:1928738
    See related
    Ensembl:ENSMUSG00000032602 Vega:OTTMUSG00000050670
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CAC; Cact; mCAC; C78826; 1110007P09Rik
    Expression
    Ubiquitous expression in heart adult (RPKM 46.4), colon adult (RPKM 29.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Slc25a20 in Genome Data Viewer
    Location:
    9; 9 F2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (108662098..108684641)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (108564429..108586972)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 Neighboring gene protein kinase, cAMP dependent regulatory, type II alpha Neighboring gene inositol hexaphosphate kinase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    acyl carnitine transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    carnitine transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial inner membrane HDA PubMed 
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mitochondrial carnitine/acylcarnitine carrier protein
    NP_065266.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020520.5NP_065266.1  mitochondrial carnitine/acylcarnitine carrier protein

      See identical proteins and their annotated locations for NP_065266.1

      Status: VALIDATED

      Source sequence(s)
      CT571271
      Consensus CDS
      CCDS23535.1
      UniProtKB/Swiss-Prot
      Q9Z2Z6
      Related
      ENSMUSP00000035222.5, OTTMUSP00000069097, ENSMUST00000035222.5
      Conserved Domains (1) summary
      pfam00153
      Location:106198
      Mito_carr; Mitochondrial carrier protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      108662098..108684641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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