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    Aldh9a1 aldehyde dehydrogenase 9, subfamily A1 [ Mus musculus (house mouse) ]

    Gene ID: 56752, updated on 23-Jun-2021

    Summary

    Official Symbol
    Aldh9a1provided by MGI
    Official Full Name
    aldehyde dehydrogenase 9, subfamily A1provided by MGI
    Primary source
    MGI:MGI:1861622
    See related
    Ensembl:ENSMUSG00000026687
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ESTM4; Abaldh; ESTM40; TMABA-; Tmabadh; AA139417; TMABA-DH
    Expression
    Ubiquitous expression in kidney adult (RPKM 54.7), liver adult (RPKM 50.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Aldh9a1 in Genome Data Viewer
    Location:
    1; 1 H2.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (167177532..167196099)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (167349963..167368530)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (169280122..169298661)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domains 1 Neighboring gene predicted gene, 24182 Neighboring gene microsomal glutathione S-transferase 3 Neighboring gene predicted gene, 34207 Neighboring gene leucine rich repeat containing 52

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within carnitine metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cellular aldehyde metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neurotransmitter biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein homotetramerization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 

    General protein information

    Preferred Names
    4-trimethylaminobutyraldehyde dehydrogenase
    Names
    aldehyde dehydrogenase family 9 member A1
    gamma-aminobutyraldehyde dehydrogenase
    NP_064377.2
    XP_006497013.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019993.4NP_064377.2  4-trimethylaminobutyraldehyde dehydrogenase precursor

      See identical proteins and their annotated locations for NP_064377.2

      Status: VALIDATED

      Source sequence(s)
      AC113970
      Consensus CDS
      CCDS35765.1
      UniProtKB/Swiss-Prot
      Q9JLJ2
      UniProtKB/TrEMBL
      Q3TMT4, Q3U367, Q3V1N7
      Related
      ENSMUSP00000028004.10, ENSMUST00000028004.11
      Conserved Domains (1) summary
      cd07090
      Location:55512
      ALDH_F9_TMBADH; NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      167177532..167196099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496950.4XP_006497013.1  4-trimethylaminobutyraldehyde dehydrogenase isoform X1

      Conserved Domains (1) summary
      cl11961
      Location:1312
      ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily
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