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    Litaf LPS-induced TN factor [ Mus musculus (house mouse) ]

    Gene ID: 56722, updated on 23-Jun-2021

    Summary

    Official Symbol
    Litafprovided by MGI
    Official Full Name
    LPS-induced TN factorprovided by MGI
    Primary source
    MGI:MGI:1929512
    See related
    Ensembl:ENSMUSG00000022500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N4WB; TBX1; C85531; N4WBP3; 3222402J11Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 67.6), genital fat pad adult (RPKM 52.8) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Litaf in Genome Data Viewer
    Location:
    16; 16 A1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10777137..10810985, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10959273..10993121, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (10959366..10993214, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53936 Neighboring gene predicted gene, 21859 Neighboring gene predicted gene 4262 Neighboring gene predicted gene 10832 Neighboring gene MRT4, mRNA turnover 4 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription activator activity, RNA polymerase II-specific ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables WW domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic side of early endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic side of late endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic side of lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic side of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog
    Names
    LITAF-like protein
    LPS-induced TNF-alpha factor homolog
    Nedd4 WW domain-binding protein 3
    estrogen-enhanced transcript protein
    mEET

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019980.2NP_064364.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

      See identical proteins and their annotated locations for NP_064364.1

      Status: VALIDATED

      Source sequence(s)
      AK076162, BX637242
      Consensus CDS
      CCDS27958.1
      UniProtKB/Swiss-Prot
      Q9JLJ0
      Related
      ENSMUSP00000023143.8, ENSMUST00000023143.14
      Conserved Domains (1) summary
      pfam10601
      Location:91159
      zf-LITAF-like; LITAF-like zinc ribbon domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      10777137..10810985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249222.2XP_030105082.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1

      Related
      ENSMUSP00000112667.2, ENSMUST00000117360.8
      Conserved Domains (1) summary
      pfam10601
      Location:91159
      zf-LITAF-like; LITAF-like zinc ribbon domain
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