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    sema3b sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [ Danio rerio (zebrafish) ]

    Gene ID: 567064, updated on 8-Dec-2018

    Summary

    Official Symbol
    sema3bprovided by ZNC
    Official Full Name
    sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081105-78
    See related
    Ensembl:ENSDARG00000011672
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    si:ch211-106g4.2
    Orthologs

    Genomic context

    See sema3b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (26583832..26642571, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (26564693..26623380, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene zgc:136971 Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl Neighboring gene transmembrane protein 51a Neighboring gene ribosomal protein S11b Neighboring gene kazrin, periplakin interacting protein a

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    chemorepellent activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neuropilin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    semaphorin receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    negative chemotaxis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of axon extension involved in axon guidance IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neural crest cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    semaphorin-plexin signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    semaphorin-3B
    Names
    semaphorin 3B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128346.1NP_001121818.1  semaphorin-3B precursor

      See identical proteins and their annotated locations for NP_001121818.1

      Status: PROVISIONAL

      Source sequence(s)
      BX548158
      UniProtKB/TrEMBL
      M9MM94
      Related
      ENSDARP00000015477.7, ENSDART00000027301.8
      Conserved Domains (3) summary
      cd05871
      Location:574664
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      smart00423
      Location:514550
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl15693
      Location:46515
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      26583832..26642571 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167047.4XP_005167104.1  semaphorin-3B isoform X1

      See identical proteins and their annotated locations for XP_005167104.1

      UniProtKB/TrEMBL
      M9MM94
      Conserved Domains (3) summary
      cd05871
      Location:574664
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      smart00423
      Location:514550
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl15693
      Location:46515
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394726.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      208603..231915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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