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    Ranbp9 RAN binding protein 9 [ Mus musculus (house mouse) ]

    Gene ID: 56705, updated on 4-Nov-2018

    Summary

    Official Symbol
    Ranbp9provided by MGI
    Official Full Name
    RAN binding protein 9provided by MGI
    Primary source
    MGI:MGI:1928741
    See related
    Ensembl:ENSMUSG00000038546
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ibap1; IBAP-1; RanBPM
    Expression
    Ubiquitous expression in testis adult (RPKM 40.0), adrenal adult (RPKM 14.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ranbp9 in Genome Data Viewer
    Location:
    13; 13 A4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (43402673..43481283, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (43498042..43576342, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene glucose-fructose oxidoreductase domain containing 1 Neighboring gene sirtuin 5 Neighboring gene nucleolar protein 7 Neighboring gene predicted gene, 32878 Neighboring gene non-histone chromosomal protein HMG-17 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    Ran GTPase binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    negative regulation of ERK1 and ERK2 cascade ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    NOT centrosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ran-binding protein 9
    Names
    B cell antigen receptor Ig beta associated protein 1
    ran-binding protein M

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019930.2NP_064314.2  ran-binding protein 9

      Status: VALIDATED

      Source sequence(s)
      AC132121, AF006465
      Consensus CDS
      CCDS49252.1
      UniProtKB/Swiss-Prot
      P69566
      UniProtKB/TrEMBL
      E9Q5D6
      Related
      ENSMUSP00000130636.1, ENSMUST00000144326.3
      Conserved Domains (5) summary
      smart00667
      Location:346379
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:385441
      CTLH; C-terminal to LisH motif
      smart00757
      Location:597698
      CRA; CT11-RanBPM
      pfam10607
      Location:385439
      CLTH; CTLH/CRA C-terminal to LisH motif domain
      cd12909
      Location:171313
      SPRY_RanBP9_10; SPRY domain in Ran binding proteins 9 and 10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      43402673..43481283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001780794.1 RNA Sequence

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