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    Copz1 coatomer protein complex, subunit zeta 1 [ Mus musculus (house mouse) ]

    Gene ID: 56447, updated on 23-Jun-2021

    Summary

    Official Symbol
    Copz1provided by MGI
    Official Full Name
    coatomer protein complex, subunit zeta 1provided by MGI
    Primary source
    MGI:MGI:1929063
    See related
    Ensembl:ENSMUSG00000060992
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA407760; D4Ertd360; D4Ertd360e; 5930435A22Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 79.6), liver E14.5 (RPKM 69.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Copz1 in Genome Data Viewer
    Location:
    15 F3; 15 58.74 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (103181261..103208295)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (103272888..103299865)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (103103349..103130296)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene nuclear factor, erythroid derived 2 Neighboring gene microRNA 148b Neighboring gene predicted gene, 41406 Neighboring gene G protein-coupled receptor 84 Neighboring gene zinc finger protein 385A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC118060

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in intra-Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within toxin transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of COPI vesicle coat IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of COPI vesicle coat ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    coatomer subunit zeta-1
    Names
    nonclathrin coat protein zeta1-COP
    zeta-1 COP
    zeta-1-coat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357748.1NP_001344677.1  coatomer subunit zeta-1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC164069
      Related
      ENSMUSP00000155674.2, ENSMUST00000230893.2
      Conserved Domains (1) summary
      cd14829
      Location:14145
      Zeta-COP; zeta subunit of the F-COPI complex
    2. NM_019817.2NP_062791.1  coatomer subunit zeta-1 isoform 2

      See identical proteins and their annotated locations for NP_062791.1

      Status: VALIDATED

      Source sequence(s)
      AC164069
      Consensus CDS
      CCDS27901.1
      UniProtKB/Swiss-Prot
      P61924
      UniProtKB/TrEMBL
      Q542M2
      Related
      ENSMUSP00000097738.4, ENSMUST00000100162.5
      Conserved Domains (1) summary
      cd14829
      Location:14145
      Zeta-COP; zeta subunit of the F-COPI complex

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      103181261..103208295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004938859.1 RNA Sequence

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