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    Arpc1a actin related protein 2/3 complex, subunit 1A [ Mus musculus (house mouse) ]

    Gene ID: 56443, updated on 5-Feb-2019

    Summary

    Official Symbol
    Arpc1aprovided by MGI
    Official Full Name
    actin related protein 2/3 complex, subunit 1Aprovided by MGI
    Primary source
    MGI:MGI:1928896
    See related
    Ensembl:ENSMUSG00000029621
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    41kDa; Sid32; Sid329; AA407347; 0610010H08Rik; 1110030K07Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 113.1), CNS E18 (RPKM 73.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arpc1a in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (145083869..145108756)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145844738..145869625)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene 4871 Neighboring gene RIKEN cDNA 1700018F24 gene Neighboring gene actin related protein 2/3 complex, subunit 1B Neighboring gene PDGFA associated protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    actin binding IEA
    Inferred from Electronic Annotation
    more info
     
    actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    Arp2/3 complex-mediated actin nucleation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Arp2/3 protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Arp2/3 protein complex TAS
    Traceable Author Statement
    more info
    PubMed 
    actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    muscle cell projection membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    actin-related protein 2/3 complex subunit 1A
    Names
    SOP2-like protein
    sid 329

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019767.2NP_062741.1  actin-related protein 2/3 complex subunit 1A

      See identical proteins and their annotated locations for NP_062741.1

      Status: PROVISIONAL

      Source sequence(s)
      AC110556
      Consensus CDS
      CCDS19855.1
      UniProtKB/Swiss-Prot
      Q9R0Q6
      Related
      ENSMUSP00000031625.8, ENSMUST00000031625.14
      Conserved Domains (3) summary
      COG2319
      Location:1362
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:1150
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:46280
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      145083869..145108756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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