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    Ppp4c protein phosphatase 4, catalytic subunit [ Mus musculus (house mouse) ]

    Gene ID: 56420, updated on 5-Aug-2018

    Summary

    Official Symbol
    Ppp4cprovided by MGI
    Official Full Name
    protein phosphatase 4, catalytic subunitprovided by MGI
    Primary source
    MGI:MGI:1891763
    See related
    Ensembl:ENSMUSG00000030697 Vega:OTTMUSG00000058355
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ppx; pp4; PP-X; PP4C; AU016079; 1110002D08Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 94.8), CNS E11.5 (RPKM 74.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ppp4c in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (126785866..126792471, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133929382..133935985, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene yippee like 3 Neighboring gene T-box 6 Neighboring gene aldolase A, fructose-bisphosphate Neighboring gene family with sequence similarity 57, member B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    NF-kappaB-inducing kinase activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    lamin binding ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    phosphoprotein phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein serine/threonine phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    protein serine/threonine phosphatase activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    dephosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of double-strand break repair via homologous recombination ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    protein phosphatase 4 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    serine/threonine-protein phosphatase 4 catalytic subunit
    Names
    protein phosphatase X
    NP_062648.1
    XP_006508112.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360464.1NP_001347393.1  serine/threonine-protein phosphatase 4 catalytic subunit

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AC124505
      Conserved Domains (1) summary
      cd07415
      Location:6290
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
    2. NM_019674.4NP_062648.1  serine/threonine-protein phosphatase 4 catalytic subunit

      See identical proteins and their annotated locations for NP_062648.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AC124505
      Consensus CDS
      CCDS21844.1
      UniProtKB/Swiss-Prot
      P97470
      UniProtKB/TrEMBL
      Q3UNF2
      Related
      ENSMUSP00000032936.6, OTTMUSP00000074717, ENSMUST00000032936.7
      Conserved Domains (1) summary
      cd07415
      Location:6290
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      126785866..126792471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508049.1XP_006508112.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X1

      See identical proteins and their annotated locations for XP_006508112.1

      Conserved Domains (1) summary
      cd07415
      Location:1211
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
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