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    Arid3b AT rich interactive domain 3B (BRIGHT-like) [ Mus musculus (house mouse) ]

    Gene ID: 56380, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arid3bprovided by MGI
    Official Full Name
    AT rich interactive domain 3B (BRIGHT-like)provided by MGI
    Primary source
    MGI:MGI:1930768
    See related
    Ensembl:ENSMUSG00000004661
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bdp; Dri2
    Expression
    Broad expression in thymus adult (RPKM 15.4), testis adult (RPKM 14.5) and 27 other tissues See more
    Orthologs

    Genomic context

    See Arid3b in Genome Data Viewer
    Location:
    9; 9 B
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (57790353..57836847, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (57638303..57684291, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene CDC-like kinase 3 Neighboring gene predicted gene, 32510 Neighboring gene predicted gene 7547 Neighboring gene meiotic nuclear divisions 1 homolog pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    • PluriNetWork, organism-specific biosystem (from WikiPathways)
      PluriNetWork, organism-specific biosystemThe aim of the PluriNetWork is to give an overview of specific mechanisms associated with pluripotency in mouse. Each node represents a gene and its corresponding protein product. As stated, we inten...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC59291

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    AT-rich interactive domain-containing protein 3B
    Names
    ARID domain-containing protein 3B
    AT rich interactive domain 3B (Bright like)
    bright and dead ringer gene product homologous protein Bdp
    bright and dead ringer protein
    bright-like protein
    dead ringer homolog 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019689.2NP_062663.1  AT-rich interactive domain-containing protein 3B

      See identical proteins and their annotated locations for NP_062663.1

      Status: PROVISIONAL

      Source sequence(s)
      AC122534
      Consensus CDS
      CCDS23233.1
      UniProtKB/Swiss-Prot
      Q9Z1N7
      Related
      ENSMUSP00000130173.1, ENSMUST00000171444.7
      Conserved Domains (1) summary
      smart00501
      Location:214303
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      57790353..57836847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511291.3XP_006511354.1  AT-rich interactive domain-containing protein 3B isoform X1

      See identical proteins and their annotated locations for XP_006511354.1

      UniProtKB/Swiss-Prot
      Q9Z1N7
      Conserved Domains (1) summary
      smart00501
      Location:214303
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    2. XM_011242774.1XP_011241076.1  AT-rich interactive domain-containing protein 3B isoform X3

      Conserved Domains (1) summary
      smart00501
      Location:177
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    3. XM_011242775.2XP_011241077.1  AT-rich interactive domain-containing protein 3B isoform X4

      See identical proteins and their annotated locations for XP_011241077.1

      Conserved Domains (1) summary
      smart00501
      Location:164
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    4. XM_011242776.1XP_011241078.1  AT-rich interactive domain-containing protein 3B isoform X4

      See identical proteins and their annotated locations for XP_011241078.1

      Conserved Domains (1) summary
      smart00501
      Location:164
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    5. XM_006511292.3XP_006511355.1  AT-rich interactive domain-containing protein 3B isoform X2

      Related
      ENSMUSP00000096283.3, ENSMUST00000098686.3
      Conserved Domains (1) summary
      smart00501
      Location:214303
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
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