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    Arid3b AT rich interactive domain 3B (BRIGHT-like) [ Mus musculus (house mouse) ]

    Gene ID: 56380, updated on 23-Jun-2021

    Summary

    Official Symbol
    Arid3bprovided by MGI
    Official Full Name
    AT rich interactive domain 3B (BRIGHT-like)provided by MGI
    Primary source
    MGI:MGI:1930768
    See related
    Ensembl:ENSMUSG00000004661
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bd; Dr; Bdp; Dri2
    Expression
    Broad expression in thymus adult (RPKM 15.4), testis adult (RPKM 14.5) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Arid3b in Genome Data Viewer
    Location:
    9; 9 B
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (57697636..57744130, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (57790353..57836847, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (57638303..57684291, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene enhancer of mRNA decapping 3 Neighboring gene CDC-like kinase 3 Neighboring gene predicted gene, 32510 Neighboring gene predicted gene 7547 Neighboring gene meiotic nuclear divisions 1 homolog pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC59291

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    AT-rich interactive domain-containing protein 3B
    Names
    ARID domain-containing protein 3B
    AT rich interactive domain 3B (Bright like)
    bright and dead ringer gene product homologous protein Bdp
    bright and dead ringer protein
    bright-like protein
    dead ringer homolog 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001379353.1NP_001366282.1  AT-rich interactive domain-containing protein 3B

      Status: VALIDATED

      Source sequence(s)
      AC122534
      Conserved Domains (1) summary
      cd16879
      Location:202327
      ARID_ARID3B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 3B (ARID3B) and similar proteins
    2. NM_019689.2NP_062663.1  AT-rich interactive domain-containing protein 3B

      See identical proteins and their annotated locations for NP_062663.1

      Status: VALIDATED

      Source sequence(s)
      AC122534
      Consensus CDS
      CCDS23233.1
      UniProtKB/Swiss-Prot
      Q9Z1N7
      Related
      ENSMUSP00000130173.2, ENSMUST00000171444.8
      Conserved Domains (1) summary
      cd16879
      Location:202327
      ARID_ARID3B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 3B (ARID3B) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      57697636..57744130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030244462.1XP_030100322.1  AT-rich interactive domain-containing protein 3B isoform X3

      Conserved Domains (1) summary
      cl28902
      Location:188
      ARID; ARID/BRIGHT DNA binding domain family
    2. XM_011242774.1XP_011241076.1  AT-rich interactive domain-containing protein 3B isoform X2

      Conserved Domains (1) summary
      cl28902
      Location:1101
      ARID; ARID/BRIGHT DNA binding domain family
    3. XM_011242776.2XP_011241078.1  AT-rich interactive domain-containing protein 3B isoform X3

      See identical proteins and their annotated locations for XP_011241078.1

      Conserved Domains (1) summary
      cl28902
      Location:188
      ARID; ARID/BRIGHT DNA binding domain family
    4. XM_006511292.5XP_006511355.1  AT-rich interactive domain-containing protein 3B isoform X1

      Related
      ENSMUSP00000096283.4, ENSMUST00000098686.4
      Conserved Domains (1) summary
      cd16879
      Location:202327
      ARID_ARID3B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 3B (ARID3B) and similar proteins
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