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    1110004F10Rik RIKEN cDNA 1110004F10 gene [ Mus musculus (house mouse) ]

    Gene ID: 56372, updated on 23-Jun-2021

    Summary

    Official Symbol
    1110004F10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1110004F10 geneprovided by MGI
    Primary source
    MGI:MGI:1929274
    See related
    Ensembl:ENSMUSG00000030663
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Smap; Smacp; sid20; sid2057; sid2057p
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 81.4), CNS E18 (RPKM 61.8) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See 1110004F10Rik in Genome Data Viewer
    Location:
    7; 7 F1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (115680596..115704445)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (116081363..116105210)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (123236894..123248724)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51455 Neighboring gene SRY (sex determining region Y)-box 6 Neighboring gene RIKEN cDNA 1700003G18 gene Neighboring gene SRY (sex determining region Y)-box 6, opposite strand Neighboring gene nucleoporin 35 pseudogene Neighboring gene pleckstrin homology domain containing, family A member 7 Neighboring gene predicted gene 44867 Neighboring gene small nucleolar RNA, C/D box 14A Neighboring gene ribosomal protein S13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    small acidic protein
    Names
    sid 2057
    small acidic protein sid2057p

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019772.2NP_062746.1  small acidic protein

      See identical proteins and their annotated locations for NP_062746.1

      Status: PROVISIONAL

      Source sequence(s)
      AC160535
      Consensus CDS
      CCDS21766.1
      UniProtKB/Swiss-Prot
      Q9R0P4
      Related
      ENSMUSP00000032899.6, ENSMUST00000032899.12
      Conserved Domains (1) summary
      pfam15477
      Location:27103
      SMAP; Small acidic protein family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      115680596..115704445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242811.2XP_030098671.1  small acidic protein isoform X1

      Conserved Domains (1) summary
      pfam15477
      Location:884
      SMAP; Small acidic protein family
    2. XM_030242810.2XP_030098670.1  small acidic protein isoform X1

      Related
      ENSMUSP00000102219.2, ENSMUST00000106608.8
      Conserved Domains (1) summary
      pfam15477
      Location:884
      SMAP; Small acidic protein family
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