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    Pdcd5 programmed cell death 5 [ Mus musculus (house mouse) ]

    Gene ID: 56330, updated on 16-Oct-2021

    Summary

    Official Symbol
    Pdcd5provided by MGI
    Official Full Name
    programmed cell death 5provided by MGI
    Primary source
    MGI:MGI:1913538
    See related
    Ensembl:ENSMUSG00000030417
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tfar19; AA408513; 2200003D22Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 28.1), CNS E11.5 (RPKM 21.7) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pdcd5 in Genome Data Viewer
    Location:
    7; 7 B2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (35341410..35346907, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (35641985..35647482, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (36427004..36432501, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene regulator of G-protein signalling 9 binding protein Neighboring gene ankyrin repeat domain 27 (VPS9 domain) Neighboring gene predicted gene, 42379 Neighboring gene dpy-19-like 3 (C. elegans)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103124

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables acetyltransferase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables beta-tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables heparin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    programmed cell death protein 5
    Names
    TF-1 cell apoptosis-related protein 19

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019746.4NP_062720.1  programmed cell death protein 5

      See identical proteins and their annotated locations for NP_062720.1

      Status: PROVISIONAL

      Source sequence(s)
      AC151531
      Consensus CDS
      CCDS52203.1
      UniProtKB/Swiss-Prot
      P56812
      UniProtKB/TrEMBL
      Q564F6
      Related
      ENSMUSP00000113761.2, ENSMUST00000118501.8
      Conserved Domains (1) summary
      pfam01984
      Location:9101
      dsDNA_bind; Double-stranded DNA-binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      35341410..35346907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153270.1XP_036009163.1  programmed cell death protein 5 isoform X1

      Conserved Domains (1) summary
      cl00928
      Location:100142
      dsDNA_bind; Double-stranded DNA-binding domain
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