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    Dmrtb1 DMRT-like family B with proline-rich C-terminal, 1 [ Mus musculus (house mouse) ]

    Gene ID: 56296, updated on 20-Jul-2021

    Summary

    Official Symbol
    Dmrtb1provided by MGI
    Official Full Name
    DMRT-like family B with proline-rich C-terminal, 1provided by MGI
    Primary source
    MGI:MGI:1927125
    See related
    Ensembl:ENSMUSG00000028610
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pr; Dmrt; Dmrt6; Prp13
    Expression
    Restricted expression toward testis adult (RPKM 254.4) See more
    Orthologs
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    Genomic context

    See Dmrtb1 in Genome Data Viewer
    Location:
    4; 4 C7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (107533485..107561208, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (107676288..107704011, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (107348895..107356767, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene GLIS family zinc finger 1 Neighboring gene RIKEN cDNA 4930552P06 gene Neighboring gene predicted gene, 52673 Neighboring gene RIKEN cDNA 1700047F07 gene Neighboring gene uncharacterized LOC115486425 Neighboring gene predicted gene 12899 Neighboring gene translocase of outer mitochondrial membrane 22 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    NOT enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT enables sequence-specific DNA binding IKR
    Inferred from Key Residues
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in germ cell development IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sex differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    doublesex- and mab-3-related transcription factor B1
    Names
    doublesex and mab-3 related transcription factor 6
    proline-rich protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019872.2NP_063925.1  doublesex- and mab-3-related transcription factor B1

      See identical proteins and their annotated locations for NP_063925.1

      Status: VALIDATED

      Source sequence(s)
      AL627259
      Consensus CDS
      CCDS51254.1
      UniProtKB/Swiss-Prot
      A2A9I7
      UniProtKB/TrEMBL
      Q3V0Z3
      Related
      ENSMUSP00000064220.5, ENSMUST00000069271.5
      Conserved Domains (1) summary
      pfam00751
      Location:349
      DM; DM DNA binding domain

    RNA

    1. NR_151717.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK132787, AL627259, CJ199365
      Related
      ENSMUST00000131776.8

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      107533485..107561208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253681.1XP_030109541.1  doublesex- and mab-3-related transcription factor B1 isoform X1

      Conserved Domains (1) summary
      pfam00751
      Location:349
      DM; DM DNA binding domain
    2. XM_036164258.1XP_036020151.1  doublesex- and mab-3-related transcription factor B1 isoform X2

      Conserved Domains (1) summary
      pfam00751
      Location:349
      DM; DM DNA binding domain
    3. XM_036164257.1XP_036020150.1  doublesex- and mab-3-related transcription factor B1 isoform X1

      Conserved Domains (1) summary
      pfam00751
      Location:349
      DM; DM DNA binding domain
    4. XM_030253682.1XP_030109542.1  doublesex- and mab-3-related transcription factor B1 isoform X3

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