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    Gkap1 G kinase anchoring protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 56278, updated on 8-Aug-2021

    Summary

    Official Symbol
    Gkap1provided by MGI
    Official Full Name
    G kinase anchoring protein 1provided by MGI
    Primary source
    MGI:MGI:1891694
    See related
    Ensembl:ENSMUSG00000021552
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    42kD; Gkap; 42kDa; Gkap42; D13Ertd340; D13Ertd340e; 4933400B15Rik
    Expression
    Broad expression in testis adult (RPKM 36.7), placenta adult (RPKM 11.9) and 15 other tissues See more
    Orthologs
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    Genomic context

    See Gkap1 in Genome Data Viewer
    Location:
    13 B1; 13 30.97 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (58381160..58422691, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (58233346..58274877, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (58334712..58375549, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene ubiquilin 1 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene predicted gene, 26555 Neighboring gene kinesin family member 27 Neighboring gene microRNA 6369 Neighboring gene RIKEN cDNA 2210016F16 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    G kinase-anchoring protein 1
    Names
    42 kD cGMP-dependent protein kinase anchoring protein
    cGMP-dependent protein kinase anchoring protein
    cGMP-dependent protein kinase-anchoring protein of 42 kDa

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019832.4NP_062806.1  G kinase-anchoring protein 1

      See identical proteins and their annotated locations for NP_062806.1

      Status: VALIDATED

      Source sequence(s)
      BC052347, W84281
      Consensus CDS
      CCDS36684.1
      UniProtKB/Swiss-Prot
      Q9JMB0
      Related
      ENSMUSP00000089169.5, ENSMUST00000091579.6
      Conserved Domains (1) summary
      COG1196
      Location:188349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      58381160..58422691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011244542.3XP_011242844.1  G kinase-anchoring protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011242844.1

      UniProtKB/Swiss-Prot
      Q9JMB0
      Conserved Domains (1) summary
      COG1196
      Location:188349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    2. XM_030247329.2XP_030103189.1  G kinase-anchoring protein 1 isoform X2

    3. XM_006517304.5XP_006517367.1  G kinase-anchoring protein 1 isoform X2

    4. XM_030247330.2XP_030103190.1  G kinase-anchoring protein 1 isoform X2

    5. XM_011244543.4XP_011242845.1  G kinase-anchoring protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011242845.1

      UniProtKB/Swiss-Prot
      Q9JMB0
      Conserved Domains (1) summary
      COG1196
      Location:188349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    6. XM_036158099.1XP_036013992.1  G kinase-anchoring protein 1 isoform X1

      Conserved Domains (1) summary
      COG1196
      Location:188349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    7. XM_006517301.3XP_006517364.1  G kinase-anchoring protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006517364.1

      UniProtKB/Swiss-Prot
      Q9JMB0
      Conserved Domains (1) summary
      COG1196
      Location:188349
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
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