Format

Send to:

Choose Destination
    • Showing Current items.

    Gde1 glycerophosphodiester phosphodiesterase 1 [ Mus musculus (house mouse) ]

    Gene ID: 56209, updated on 31-Jan-2019

    Summary

    Official Symbol
    Gde1provided by MGI
    Official Full Name
    glycerophosphodiester phosphodiesterase 1provided by MGI
    Primary source
    MGI:MGI:1891827
    See related
    Ensembl:ENSMUSG00000033917
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mir16; RGS16; 1200003M13Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 163.5), duodenum adult (RPKM 134.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Gde1 in Genome Data Viewer
    Location:
    7; 7 F2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (118688558..118705738, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (125832072..125849252, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B230311B06 gene Neighboring gene transmembrane channel-like gene family 5 Neighboring gene centriolar coiled coil protein 110 Neighboring gene VPS35 endosomal protein sorting factor like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    glycerophosphodiester phosphodiesterase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    glycerophosphoinositol glycerophosphodiesterase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    lysophospholipase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphoric diester hydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    G protein-coupled receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    N-acylethanolamine metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    glycerophosphodiester phosphodiesterase 1
    Names
    membrane interacting protein of RGS16
    NP_062526.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019580.4NP_062526.1  glycerophosphodiester phosphodiesterase 1

      See identical proteins and their annotated locations for NP_062526.1

      Status: PROVISIONAL

      Source sequence(s)
      AK005361
      Consensus CDS
      CCDS21774.1
      UniProtKB/Swiss-Prot
      Q9JL56
      Related
      ENSMUSP00000046371.8, ENSMUST00000038791.14
      Conserved Domains (1) summary
      cd08573
      Location:68323
      GDPD_GDE1; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      118688558..118705738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center