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    Rbm38 RNA binding motif protein 38 [ Mus musculus (house mouse) ]

    Gene ID: 56190, updated on 28-Jun-2021

    Summary

    Official Symbol
    Rbm38provided by MGI
    Official Full Name
    RNA binding motif protein 38provided by MGI
    Primary source
    MGI:MGI:1889294
    See related
    Ensembl:ENSMUSG00000027510
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rn; Seb; Seb4; Rnpc1; Seb4l
    Expression
    Broad expression in thymus adult (RPKM 258.6), spleen adult (RPKM 239.1) and 19 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Rbm38 in Genome Data Viewer
    Location:
    2; 2 H3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172863680..172876527)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173021891..173034734)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (172847403..172860235)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 52538 Neighboring gene SPO11 initiator of meiotic double stranded breaks Neighboring gene ribonucleic acid export 1 Neighboring gene VISTA enhancer mm92 Neighboring gene predicted gene, 36337

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA-binding protein 38
    Names
    RNA-binding region (RNP1, RRM) containing 1
    RNA-binding region-containing protein 1
    seb4 mRNA
    ssDNA-binding protein SEB4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019547.2NP_062420.2  RNA-binding protein 38

      See identical proteins and their annotated locations for NP_062420.2

      Status: VALIDATED

      Source sequence(s)
      AI573584, AK162141, DV644612, DV653380
      Consensus CDS
      CCDS17139.1
      UniProtKB/Swiss-Prot
      Q62176
      Related
      ENSMUSP00000029014.10, ENSMUST00000029014.16
      Conserved Domains (1) summary
      cd12384
      Location:32107
      RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      172863680..172876527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499924.5XP_006499987.1  RNA-binding protein 38 isoform X1

      See identical proteins and their annotated locations for XP_006499987.1

      Conserved Domains (1) summary
      cl17169
      Location:1128
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. XM_030251891.1XP_030107751.1  RNA-binding protein 38 isoform X1

      Conserved Domains (1) summary
      cl17169
      Location:1128
      RRM_SF; RNA recognition motif (RRM) superfamily
    3. XM_030251892.1XP_030107752.1  RNA-binding protein 38 isoform X1

      Related
      ENSMUST00000155512.8
      Conserved Domains (1) summary
      cl17169
      Location:1128
      RRM_SF; RNA recognition motif (RRM) superfamily
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