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    Olfm1 olfactomedin 1 [ Mus musculus (house mouse) ]

    Gene ID: 56177, updated on 5-Sep-2021

    Summary

    Official Symbol
    Olfm1provided by MGI
    Official Full Name
    olfactomedin 1provided by MGI
    Primary source
    MGI:MGI:1860437
    See related
    Ensembl:ENSMUSG00000026833
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AMY; Noe1; OlfA; AW742568; Pancortin; Pancortin3
    Expression
    Biased expression in cortex adult (RPKM 169.2), frontal lobe adult (RPKM 159.6) and 14 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Olfm1 in Genome Data Viewer
    Location:
    2; 2 A3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (28083105..28120748)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (28193093..28230736)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (28048613..28086256)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA F730016J06 gene Neighboring gene ficolin B Neighboring gene predicted gene 13373 Neighboring gene protein phosphatase 1, regulatory subunit 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables amyloid-beta binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of AMPA glutamate receptor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in axonal growth cone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in extrinsic component of synaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extrinsic component of synaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    noelin
    Names
    Noelin 1
    Noelin 2
    Pancortin 1-4
    neuronal olfactomedin-related ER localized protein
    olfactomedin related ER localized protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038612.1NP_001033701.1  noelin isoform b precursor

      See identical proteins and their annotated locations for NP_001033701.1

      Status: VALIDATED

      Source sequence(s)
      BU512660, CB203212
      Consensus CDS
      CCDS15835.1
      UniProtKB/Swiss-Prot
      O88998
      Related
      ENSMUSP00000099943.4, ENSMUST00000102879.4
      Conserved Domains (1) summary
      pfam12308
      Location:54152
      Noelin-1; Neurogenesis glycoprotein
    2. NM_001038613.1NP_001033702.1  noelin isoform c precursor

      See identical proteins and their annotated locations for NP_001033702.1

      Status: VALIDATED

      Source sequence(s)
      AL731778, BQ768981, CT010369
      Consensus CDS
      CCDS15833.1
      UniProtKB/TrEMBL
      G3X9Q7, Q8R357
      Related
      ENSMUSP00000097815.4, ENSMUST00000100244.10
      Conserved Domains (3) summary
      smart00284
      Location:200450
      OLF; Olfactomedin-like domains
      PRK03918
      Location:64190
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12308
      Location:26124
      Noelin-1; Neurogenesis glycoprotein
    3. NM_001038614.1NP_001033703.1  noelin isoform d precursor

      See identical proteins and their annotated locations for NP_001033703.1

      Status: VALIDATED

      Source sequence(s)
      BQ768981, CB203212
      UniProtKB/Swiss-Prot
      O88998
      Related
      ENSMUST00000152415.2
      Conserved Domains (1) summary
      pfam12308
      Location:26124
      Noelin-1; Neurogenesis glycoprotein
    4. NM_019498.2NP_062371.2  noelin isoform a precursor

      See identical proteins and their annotated locations for NP_062371.2

      Status: VALIDATED

      Source sequence(s)
      AL731778, BU512660, CT010369
      Consensus CDS
      CCDS15834.1
      UniProtKB/TrEMBL
      Q8R357
      Related
      ENSMUSP00000028177.5, ENSMUST00000028177.11
      Conserved Domains (3) summary
      smart00284
      Location:228478
      OLF; Olfactomedin-like domains
      PRK03918
      Location:92218
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12308
      Location:54152
      Noelin-1; Neurogenesis glycoprotein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      28083105..28120748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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