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    Ift20 intraflagellar transport 20 [ Mus musculus (house mouse) ]

    Gene ID: 55978, updated on 3-Nov-2018

    Summary

    Official Symbol
    Ift20provided by MGI
    Official Full Name
    intraflagellar transport 20provided by MGI
    Primary source
    MGI:MGI:1915585
    See related
    Ensembl:ENSMUSG00000001105 Vega:OTTMUSG00000000139
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mIFT20; AU015496; 0610009H04Rik
    Expression
    Ubiquitous expression in duodenum adult (RPKM 42.4), small intestine adult (RPKM 37.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ift20 in Genome Data Viewer
    Location:
    11; 11 B5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (78536436..78541473)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (78349938..78354975)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene polymerase (DNA-directed), delta interacting protein 2 Neighboring gene tumor necrosis factor, alpha-induced protein 1 (endothelial) Neighboring gene transmembrane protein 97 Neighboring gene ribosomal protein L10 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    Rab GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    opsin binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cardiac muscle cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    centrosome localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    centrosome localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    cochlea development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    establishment of planar polarity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    inner ear receptor cell stereocilium organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    intraciliary transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intraciliary transport IC
    Inferred by Curator
    more info
    PubMed 
    intraciliary transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    kidney development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural precursor cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neurogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    opsin transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    photoreceptor cell outer segment organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    protein localization to cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to cilium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to cilium ISO
    Inferred from Sequence Orthology
    more info
     
    protein localization to plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of autophagosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of canonical Wnt signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of platelet-derived growth factor receptor-alpha signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    smoothened signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    visual learning IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    centriole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    ciliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ciliary base IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cis-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    dendrite terminus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intraciliary transport particle B IDA
    Inferred from Direct Assay
    more info
    PubMed 
    kinociliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    microvillus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    motile cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor connecting cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor outer segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    stereocilium IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    intraflagellar transport protein 20 homolog
    Names
    intraflagellar transport 20 homolog
    uterine protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018854.5NP_061342.1  intraflagellar transport protein 20 homolog

      See identical proteins and their annotated locations for NP_061342.1

      Status: VALIDATED

      Source sequence(s)
      AL591177
      Consensus CDS
      CCDS25111.1
      UniProtKB/Swiss-Prot
      Q61025
      Related
      ENSMUSP00000118015.1, OTTMUSP00000000193, ENSMUST00000128788.7
      Conserved Domains (1) summary
      pfam14931
      Location:10128
      IFT20; Intraflagellar transport complex B, subunit 20

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      78536436..78541473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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