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    Bri3 brain protein I3 [ Mus musculus (house mouse) ]

    Gene ID: 55950, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bri3provided by MGI
    Official Full Name
    brain protein I3provided by MGI
    Primary source
    MGI:MGI:1933174
    See related
    Ensembl:ENSMUSG00000047843
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    I3
    Expression
    Ubiquitous expression in stomach adult (RPKM 96.2), adrenal adult (RPKM 87.7) and 27 other tissues See more
    Orthologs

    Genomic context

    See Bri3 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (144244437..144446757)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145005306..145025442)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix family, member a15 Neighboring gene tectonin beta-propeller repeat containing 1 Neighboring gene RIKEN cDNA 2900089D17 gene Neighboring gene predicted gene, 38675 Neighboring gene BAI1-associated protein 2-like 1 Neighboring gene predicted gene 15708 Neighboring gene Dmrt1 interacting ncRNA Neighboring gene predicted gene, 33552 Neighboring gene predicted gene, 33714 Neighboring gene predicted gene, 33765

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163709.1NP_001157181.1  brain protein I3 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      AC121845, AC139636, AK049027, AK080467, BE991935
      Consensus CDS
      CCDS51694.1
      UniProtKB/TrEMBL
      E9PUB2, Q8C4X5, Q8C7X8
      Related
      ENSMUSP00000106323.1, ENSMUST00000110695.7
      Conserved Domains (1) summary
      pfam10164
      Location:40120
      DUF2367; Uncharacterized conserved protein (DUF2367)
    2. NM_018772.4NP_061242.3  brain protein I3 isoform 1

      See identical proteins and their annotated locations for NP_061242.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC139636, AK049027, AK080467, BE991935
      Consensus CDS
      CCDS19848.1
      UniProtKB/Swiss-Prot
      P28662
      UniProtKB/TrEMBL
      Q8C4X5, Q8C7X8
      Related
      ENSMUSP00000057263.6, ENSMUST00000056578.6
      Conserved Domains (1) summary
      pfam10164
      Location:29124
      DUF2367; Uncharacterized conserved protein (DUF2367)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      144244437..144446757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_377192.3 RNA Sequence

      Related
      ENSMUST00000155491.7
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