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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_007009.1 RefSeqGene
- Range
-
4986..194249
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_176
mRNA and Protein(s)
-
NM_001316690.1 → NP_001303619.1 ATP-dependent chromatin remodeler CHD7 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as CRA_e) lacks most of the internal exons compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is significantly shorter compared to isoform 1. This isoform, described in PMID:20925924, may negatively regulate the activity of isoform 1.
- Source sequence(s)
-
AC113143, BC068000, BI039198, GU060498, W78145
- Consensus CDS
-
CCDS83299.1
- UniProtKB/Swiss-Prot
-
Q9P2D1
- Related
- ENSP00000437061.1, ENST00000524602.5
- Conserved Domains (3) summary
-
- smart00592
Location:593 → 637
- BRK; domain in transcription and CHROMO domain helicases
- pfam15991
Location:270 → 418
- G_path_suppress; G-protein pathway suppressor
- cl25764
Location:364 → 587
- PAT1; Topoisomerase II-associated protein PAT1
-
NM_017780.4 → NP_060250.2 ATP-dependent chromatin remodeler CHD7 isoform 1
See identical proteins and their annotated locations for NP_060250.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AB037837, AC023102, AC113143, AK123158, BC033116, BC051264, BC068000, BI039198, W78145
- Consensus CDS
-
CCDS47865.1
- UniProtKB/Swiss-Prot
- D0VBA5, E9PNZ2, Q05DI5, Q2TAN4, Q66K35, Q7Z6C0, Q7Z7Q2, Q9NXA0, Q9NXA3, Q9P2D1
- Related
- ENSP00000392028.1, ENST00000423902.7
- Conserved Domains (9) summary
-
- smart00592
Location:2642 → 2686
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:202 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam07533
Location:2564 → 2604
- BRK; BRK domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
60678740..60868028
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011517553.3 → XP_011515855.1 chromodomain-helicase-DNA-binding protein 7 isoform X1
See identical proteins and their annotated locations for XP_011515855.1
- Conserved Domains (9) summary
-
- smart00592
Location:2672 → 2716
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:202 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam07533
Location:2594 → 2634
- BRK; BRK domain
-
XM_047421945.1 → XP_047277901.1 chromodomain-helicase-DNA-binding protein 7 isoform X4
-
XM_011517555.3 → XP_011515857.1 chromodomain-helicase-DNA-binding protein 7 isoform X2
- Conserved Domains (9) summary
-
- smart00592
Location:2671 → 2715
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:202 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam07533
Location:2593 → 2633
- BRK; BRK domain
-
XM_047421946.1 → XP_047277902.1 chromodomain-helicase-DNA-binding protein 7 isoform X5
-
XM_017013613.2 → XP_016869102.1 chromodomain-helicase-DNA-binding protein 7 isoform X3
- Related
- ENSP00000603358.1, ENST00000933299.1
- Conserved Domains (9) summary
-
- smart00592
Location:2641 → 2685
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:202 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam07533
Location:2563 → 2603
- BRK; BRK domain
-
XM_047421947.1 → XP_047277903.1 chromodomain-helicase-DNA-binding protein 7 isoform X6
-
XM_011517560.3 → XP_011515862.1 chromodomain-helicase-DNA-binding protein 7 isoform X7
- Conserved Domains (7) summary
-
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:187 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
-
XM_011517554.4 → XP_011515856.1 chromodomain-helicase-DNA-binding protein 7 isoform X1
See identical proteins and their annotated locations for XP_011515856.1
- Conserved Domains (9) summary
-
- smart00592
Location:2672 → 2716
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:202 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam07533
Location:2594 → 2634
- BRK; BRK domain
-
XM_017013612.2 → XP_016869101.1 chromodomain-helicase-DNA-binding protein 7 isoform X1
- Conserved Domains (9) summary
-
- smart00592
Location:2672 → 2716
- BRK; domain in transcription and CHROMO domain helicases
- cd00024
Location:801 → 862
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:987 → 1136
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam08430
Location:306 → 423
- Forkhead_N; Forkhead N-terminal region
- pfam09606
Location:202 → 576
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00176
Location:971 → 1258
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1290 → 1404
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:883 → 935
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam07533
Location:2594 → 2634
- BRK; BRK domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
61102480..61291800
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054360774.1 → XP_054216749.1 chromodomain-helicase-DNA-binding protein 7 isoform X1
-
XM_054360779.1 → XP_054216754.1 chromodomain-helicase-DNA-binding protein 7 isoform X4
-
XM_054360777.1 → XP_054216752.1 chromodomain-helicase-DNA-binding protein 7 isoform X2
-
XM_054360780.1 → XP_054216755.1 chromodomain-helicase-DNA-binding protein 7 isoform X5
-
XM_054360778.1 → XP_054216753.1 chromodomain-helicase-DNA-binding protein 7 isoform X3
-
XM_054360781.1 → XP_054216756.1 chromodomain-helicase-DNA-binding protein 7 isoform X6
-
XM_054360782.1 → XP_054216757.1 chromodomain-helicase-DNA-binding protein 7 isoform X7
-
XM_054360776.1 → XP_054216751.1 chromodomain-helicase-DNA-binding protein 7 isoform X1
-
XM_054360775.1 → XP_054216750.1 chromodomain-helicase-DNA-binding protein 7 isoform X1
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_017783.1: Suppressed sequence
- Description
- NM_017783.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.