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    ATG16L1 autophagy related 16 like 1 [ Homo sapiens (human) ]

    Gene ID: 55054, updated on 18-Jul-2024

    Summary

    Official Symbol
    ATG16L1provided by HGNC
    Official Full Name
    autophagy related 16 like 1provided by HGNC
    Primary source
    HGNC:HGNC:21498
    See related
    Ensembl:ENSG00000085978 MIM:610767; AllianceGenome:HGNC:21498
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IBD10; WDR30; APG16L; ATG16A; ATG16L
    Summary
    The protein encoded by this gene is part of a large protein complex that is necessary for autophagy, the major process by which intracellular components are targeted to lysosomes for degradation. Defects in this gene are a cause of susceptibility to inflammatory bowel disease type 10 (IBD10). Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jun 2010]
    Expression
    Ubiquitous expression in bone marrow (RPKM 12.7), testis (RPKM 12.0) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ATG16L1 in Genome Data Viewer
    Location:
    2q37.1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (233251673..233295669)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (233739756..233783753)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (234160319..234204315)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17328 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12466 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:233926783-233927376 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:233927377-233927970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17330 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233937995-233938700 Neighboring gene neuraminidase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17331 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17332 Neighboring gene Sharpr-MPRA regulatory region 10619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17333 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233953501-233954000 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233972121-233972622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233972623-233973122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233982267-233982860 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:233987251-233987751 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:233989436-233989982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233988888-233989435 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:233993677-233994176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:234072305-234072918 Neighboring gene NANOG hESC enhancer GRCh37_chr2:234125377-234125936 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:234131944-234132095 Neighboring gene RNA, 7SL, cytoplasmic 32, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr2:234151441-234151635 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:234155927-234157126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17336 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12469 Neighboring gene NANOG hESC enhancer GRCh37_chr2:234197330-234197831 Neighboring gene small Cajal body-specific RNA 5 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:234227861-234228828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:234228829-234229795 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:234234987-234235964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:234237262-234238093 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:234238124-234238905 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17340 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17341 Neighboring gene S-antigen visual arrestin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17342 Neighboring gene MPRA-validated peak4087 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17343 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17345 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:234307646-234308151 Neighboring gene diacylglycerol kinase delta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17346 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12471 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17347 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:234334881-234336080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17348 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17349 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:234359341-234359904 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:234376565-234376780

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Inflammatory bowel disease 10
    MedGen: C1970207 OMIM: 611081 GeneReviews: Not available
    Compare labs

    EBI GWAS Catalog

    Description
    A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.
    EBI GWAS Catalog
    A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.
    EBI GWAS Catalog
    Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.
    EBI GWAS Catalog
    Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.
    EBI GWAS Catalog
    Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.
    EBI GWAS Catalog
    Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
    EBI GWAS Catalog
    Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
    EBI GWAS Catalog
    Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
    EBI GWAS Catalog

    HIV-1 interactions

    Replication interactions

    Interaction Pubs
    High levels of additive and synergic antiretroviral activity are obtained by using antiretroviral compounds (T1249, 3TC, RAL, or IDV) in PM1 cells stably expressing anti-host shRNAs (IPO7, HSPD1, or ATG16) or anti-HIV shRNAs (Pol, RT, or Nef) PubMed

    Protein interactions

    Protein Gene Interaction Pubs
    Nef nef High levels of additive and synergic antiretroviral activity are obtained by using antiretroviral compounds (T1249, 3TC, RAL, or IDV) in PM1 cells stably expressing anti-host shRNAs (IPO7, HSPD1, or ATG16) or anti-HIV shRNAs (Pol, RT, or Nef) PubMed
    Pol gag-pol High levels of additive and synergic antiretroviral activity are obtained by using antiretroviral compounds (T1249, 3TC, RAL, or IDV) in PM1 cells stably expressing anti-host shRNAs (IPO7, HSPD1, or ATG16) or anti-HIV shRNAs (Pol, RT, or Nef) PubMed
    reverse transcriptase gag-pol High levels of additive and synergic antiretroviral activity are obtained by using antiretroviral compounds (T1249, 3TC, RAL, or IDV) in PM1 cells stably expressing anti-host shRNAs (IPO7, HSPD1, or ATG16) or anti-HIV shRNAs (Pol, RT, or Nef) PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ00045, FLJ10035, FLJ10828, FLJ22677

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables GTPase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-membrane adaptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein-membrane adaptor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables ubiquitin-like protein transferase activity TAS
    Traceable Author Statement
    more info
     
    Process Evidence Code Pubs
    involved_in C-terminal protein lipidation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in autophagosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in autophagosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in autophagosome assembly NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in corpus callosum development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in hippocampus development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in macroautophagy IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in macroautophagy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in macroautophagy TAS
    Traceable Author Statement
    more info
     
    involved_in microautophagy IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative stranded viral RNA replication IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of autophagy IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein localization to phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in xenophagy IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of Atg12-Atg5-Atg16 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of Atg12-Atg5-Atg16 complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in autophagosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    is_active_in autophagosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in autophagosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in axoneme ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    is_active_in endolysosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in phagophore assembly site membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in phagophore assembly site membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sperm midpiece ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in vacuole-isolation membrane contact site IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    autophagy-related protein 16-1
    Names
    APG16L beta
    ATG16 autophagy related 16-like 1
    WD repeat domain 30

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_023038.1 RefSeqGene

      Range
      5103..49099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001190266.2NP_001177195.1  autophagy-related protein 16-1 isoform 4

      See identical proteins and their annotated locations for NP_001177195.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) uses an alternate splice junction at the 3' end of a coding exon compared to variant 1, that causes a frameshift. The resulting isoform (4) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC013726, BC000061, BC071846, DB084962
      UniProtKB/TrEMBL
      Q17RG0, Q53SV2
      Conserved Domains (3) summary
      cd00200
      Location:231521
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:243280
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:2122
      ATG16; Autophagy protein 16 (ATG16)
    2. NM_001190267.2NP_001177196.1  autophagy-related protein 16-1 isoform 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) uses an alternate splice junction at the 5' end of a coding exon compared to variant 1, that causes a frameshift. The resulting isoform (5) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC013726, BC000061, BC006253, BC071846, DB084962
      UniProtKB/TrEMBL
      Q17RG0
      Conserved Domains (4) summary
      COG2319
      Location:199457
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:199489
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:211248
      7WD40; WD40 repeat [structural motif]
      cl23720
      Location:1110
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    3. NM_001363742.2NP_001350671.1  autophagy-related protein 16-1 isoform 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) has an additional in-frame exon compared to variant 1. The resulting isoform (6) has the same N- and C-termini but is longer compared to isoform 1.
      Source sequence(s)
      AC013726
      Consensus CDS
      CCDS86927.1
      UniProtKB/TrEMBL
      A5YM60, E7EVC7, L7UQD0
      Related
      ENSP00000375873.1, ENST00000392018.1
      Conserved Domains (4) summary
      COG2319
      Location:272390
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:332622
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:344381
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    4. NM_017974.4NP_060444.3  autophagy-related protein 16-1 isoform 2

      See identical proteins and their annotated locations for NP_060444.3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AA809053, AC013726, AK001690, BC117337, DB084962, DB474638
      Consensus CDS
      CCDS2502.2
      UniProtKB/TrEMBL
      A5YM60, L7UQD0
      Related
      ENSP00000375875.4, ENST00000392020.8
      Conserved Domains (3) summary
      cd00200
      Location:296586
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:308345
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    5. NM_030803.7NP_110430.5  autophagy-related protein 16-1 isoform 1

      See identical proteins and their annotated locations for NP_110430.5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes isoform 1.
      Source sequence(s)
      AA809053, AC013726, AY398617, BC117337, DB084962
      Consensus CDS
      CCDS2503.2
      UniProtKB/Swiss-Prot
      A3EXK9, A3EXL0, B6ZDH0, Q676U5, Q6IPN1, Q6UXW4, Q6ZVZ5, Q8NCY2, Q96JV5, Q9H619
      UniProtKB/TrEMBL
      A5YM60, L7UQD0
      Related
      ENSP00000375872.4, ENST00000392017.9
      Conserved Domains (5) summary
      COG2319
      Location:315573
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:315605
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:327364
      7WD40; WD40 repeat [structural motif]
      cl23720
      Location:117222
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    6. NM_198890.3NP_942593.2  autophagy-related protein 16-1 isoform 3

      See identical proteins and their annotated locations for NP_942593.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame segment and an alternate in-frame exon compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC013726, BC071846, DB084962, EF079890
      Consensus CDS
      CCDS54438.1
      UniProtKB/Swiss-Prot
      Q676U5
      Related
      ENSP00000318259.6, ENST00000347464.9
      Conserved Domains (3) summary
      COG2319
      Location:152410
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:152442
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:164201
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      233251673..233295669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006712608.4XP_006712671.1  autophagy-related protein 16-1 isoform X1

      See identical proteins and their annotated locations for XP_006712671.1

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
      Conserved Domains (4) summary
      COG2319
      Location:248506
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:248538
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13874
      Location:83140
      Nup54; Nucleoporin complex subunit 54
      sd00039
      Location:260297
      7WD40; WD40 repeat [structural motif]
    2. XM_047444848.1XP_047300804.1  autophagy-related protein 16-1 isoform X2

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    3. XM_047444849.1XP_047300805.1  autophagy-related protein 16-1 isoform X3

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    4. XM_005246084.3XP_005246141.1  autophagy-related protein 16-1 isoform X4

      See identical proteins and their annotated locations for XP_005246141.1

      Conserved Domains (3) summary
      COG2319
      Location:188446
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:188478
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:200237
      7WD40; WD40 repeat [structural motif]
    5. XM_005246086.3XP_005246143.1  autophagy-related protein 16-1 isoform X5

      See identical proteins and their annotated locations for XP_005246143.1

      Related
      ENSP00000362625.5, ENST00000373525.9
      Conserved Domains (3) summary
      COG2319
      Location:171429
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:171461
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:183220
      7WD40; WD40 repeat [structural motif]
    6. XM_047444850.1XP_047300806.1  autophagy-related protein 16-1 isoform X6

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332690.1 Reference GRCh38.p14 PATCHES

      Range
      197011..241007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331682.1XP_054187657.1  autophagy-related protein 16-1 isoform X1

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    2. XM_054331683.1XP_054187658.1  autophagy-related protein 16-1 isoform X2

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    3. XM_054331684.1XP_054187659.1  autophagy-related protein 16-1 isoform X3

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    4. XM_054331685.1XP_054187660.1  autophagy-related protein 16-1 isoform X4

    5. XM_054331686.1XP_054187661.1  autophagy-related protein 16-1 isoform X5

    6. XM_054331687.1XP_054187662.1  autophagy-related protein 16-1 isoform X6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      233739756..233783753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054342708.1XP_054198683.1  autophagy-related protein 16-1 isoform X1

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    2. XM_054342709.1XP_054198684.1  autophagy-related protein 16-1 isoform X2

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    3. XM_054342710.1XP_054198685.1  autophagy-related protein 16-1 isoform X3

      UniProtKB/TrEMBL
      A5YM60, L7UQD0
    4. XM_054342711.1XP_054198686.1  autophagy-related protein 16-1 isoform X4

    5. XM_054342712.1XP_054198687.1  autophagy-related protein 16-1 isoform X5

    6. XM_054342713.1XP_054198688.1  autophagy-related protein 16-1 isoform X6