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    Ly6g lymphocyte antigen 6 complex, locus G [ Mus musculus (house mouse) ]

    Gene ID: 546644, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ly6gprovided by MGI
    Official Full Name
    lymphocyte antigen 6 complex, locus Gprovided by MGI
    Primary source
    MGI:MGI:109440
    See related
    Ensembl:ENSMUSG00000022582
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gr1; Gr-1; Ly-6G
    Expression
    Biased expression in colon adult (RPKM 27.4) and liver E18 (RPKM 5.3) See more

    Genomic context

    See Ly6g in Genome Data Viewer
    Location:
    15; 15 D3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (75155261..75159128)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (74986075..74989169)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 complex, locus C2 Neighboring gene lymphocyte antigen 6 complex, locus A2 Neighboring gene predicted gene 28117 Neighboring gene lymphocyte antigen 6 complex, locus G2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    anchored component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    lymphocyte antigen 6G
    Names
    ly-6G.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310438.1NP_001297367.1  lymphocyte antigen 6G precursor

      See identical proteins and their annotated locations for NP_001297367.1

      Status: VALIDATED

      Source sequence(s)
      AC116498
      Consensus CDS
      CCDS79377.1
      UniProtKB/TrEMBL
      A0A087WQF5
      Related
      ENSMUSP00000140173.1, ENSMUST00000190262.1
      Conserved Domains (1) summary
      pfam00021
      Location:29105
      UPAR_LY6; u-PAR/Ly-6 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      75155261..75159128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521614.1XP_006521677.1  lymphocyte antigen 6G isoform X1

      See identical proteins and their annotated locations for XP_006521677.1

      UniProtKB/TrEMBL
      A0A087WQF5
      Conserved Domains (1) summary
      pfam00021
      Location:29105
      UPAR_LY6; u-PAR/Ly-6 domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_008531.1: Suppressed sequence

      Description
      NM_008531.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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