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    ARMCX6 armadillo repeat containing X-linked 6 [ Homo sapiens (human) ]

    Gene ID: 54470, updated on 22-Sep-2022

    Summary

    Official Symbol
    ARMCX6provided by HGNC
    Official Full Name
    armadillo repeat containing X-linked 6provided by HGNC
    Primary source
    HGNC:HGNC:26094
    See related
    Ensembl:ENSG00000198960 MIM:301048; AllianceGenome:HGNC:26094
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GASP10
    Summary
    Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in spleen (RPKM 13.9), endometrium (RPKM 12.8) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ARMCX6 in Genome Data Viewer
    Location:
    Xq22.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (101615125..101618000, complement)
    110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (100059755..100062630, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (100870115..100872990, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing X-linked 1 Neighboring gene armadillo repeat containing X-linked 7, pseudogene Neighboring gene armadillo repeat containing X-linked 3 Neighboring gene RNA, U6 small nuclear 30, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ20811

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021313.2 RefSeqGene

      Range
      5000..7875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001009584.2NP_001009584.1  protein ARMCX6

      See identical proteins and their annotated locations for NP_001009584.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 3. Variants 1, 2, and 3 all encode the same protein.
      Source sequence(s)
      AI076820, BC007677
      Consensus CDS
      CCDS14488.1
      UniProtKB/Swiss-Prot
      Q7L4S7, Q9NWJ3
      Related
      ENSP00000440648.1, ENST00000538627.5
      Conserved Domains (1) summary
      pfam04826
      Location:123295
      Arm_2; Armadillo-like
    2. NM_001184768.2NP_001171697.1  protein ARMCX6

      See identical proteins and their annotated locations for NP_001171697.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript. Variants 1, 2, and 3 all encode the same protein.
      Source sequence(s)
      BC007677, DA933518
      Consensus CDS
      CCDS14488.1
      UniProtKB/Swiss-Prot
      Q7L4S7, Q9NWJ3
      Related
      ENSP00000444537.1, ENST00000539247.5
      Conserved Domains (1) summary
      pfam04826
      Location:123295
      Arm_2; Armadillo-like
    3. NM_019007.4NP_061880.2  protein ARMCX6

      See identical proteins and their annotated locations for NP_061880.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. Variants 1, 2, and 3 all encode the same protein.
      Source sequence(s)
      AI076820, BC007677
      Consensus CDS
      CCDS14488.1
      UniProtKB/Swiss-Prot
      Q7L4S7, Q9NWJ3
      Related
      ENSP00000354708.4, ENST00000361910.9
      Conserved Domains (1) summary
      pfam04826
      Location:123295
      Arm_2; Armadillo-like

    RNA

    1. NR_033669.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and lacks most of the coding region compared to variant 1. This variant is not thought to be protein-coding.
      Source sequence(s)
      AI076820, BX423052
      Related
      ENST00000497931.5
    2. NR_033670.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks most of the coding region compared to variant 1. This variant is not thought to be protein-coding.
      Source sequence(s)
      AI076820, AW955663, BC007677, BX423052

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      101615125..101618000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011530976.3XP_011529278.1  protein ARMCX6 isoform X1

      Conserved Domains (1) summary
      pfam04826
      Location:186358
      Arm_2; Armadillo-like

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      100059755..100062630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)