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    Ctnnal1 catenin (cadherin associated protein), alpha-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 54366, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ctnnal1provided by MGI
    Official Full Name
    catenin (cadherin associated protein), alpha-like 1provided by MGI
    Primary source
    MGI:MGI:1859649
    See related
    Ensembl:ENSMUSG00000038816
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ACRP; C86009; Catnal1; AI616177; AW545119
    Expression
    Broad expression in bladder adult (RPKM 18.0), CNS E11.5 (RPKM 7.9) and 21 other tissues See more
    Orthologs

    Genomic context

    See Ctnnal1 in Genome Data Viewer
    Location:
    4; 4 B3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (56810935..56865379, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (56823807..56878083, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene actin-like 7a Neighboring gene elongator complex protein 1 Neighboring gene actin binding transcription modulator Neighboring gene transmembrane protein 245 Neighboring gene microRNA 32 Neighboring gene ferric-chelate reductase 1 like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    actin filament binding IEA
    Inferred from Electronic Annotation
    more info
     
    cadherin binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    Rho protein signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    alpha-catulin
    Names
    alpha-catenin related protein
    catenin alpha-like 1
    catenin alpha-like protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018761.3NP_061231.3  alpha-catulin

      See identical proteins and their annotated locations for NP_061231.3

      Status: VALIDATED

      Source sequence(s)
      AW536536, BC050070, BG064548, CF896873, CJ094037, CK794820
      Consensus CDS
      CCDS18200.1
      UniProtKB/Swiss-Prot
      O88327
      Related
      ENSMUSP00000036487.8, ENSMUST00000045142.14
      Conserved Domains (1) summary
      pfam01044
      Location:91674
      Vinculin; Vinculin family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      56810935..56865379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320319.1XP_017175808.1  alpha-catulin isoform X1

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