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    Atf7ip activating transcription factor 7 interacting protein [ Mus musculus (house mouse) ]

    Gene ID: 54343, updated on 31-Jan-2019

    Summary

    Official Symbol
    Atf7ipprovided by MGI
    Official Full Name
    activating transcription factor 7 interacting proteinprovided by MGI
    Primary source
    MGI:MGI:1858965
    See related
    Ensembl:ENSMUSG00000030213
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AM; Mcaf1; 2610204M12Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 11.1), whole brain E14.5 (RPKM 7.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atf7ip in Genome Data Viewer
    Location:
    6; 6 G1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (136518807..136610850)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (136467372..136555900)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L36A, pseudogene 3 Neighboring gene predicted gene, 44140 Neighboring gene coenzyme Q2 homolog, prenyltransferase pseudogene Neighboring gene uncharacterized LOC108169175 Neighboring gene phospholipase B domain containing 1 Neighboring gene predicted gene, 40409 Neighboring gene protein S100-A10 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATPase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription corepressor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    activating transcription factor 7-interacting protein 1
    Names
    ATFa-associated Modulator
    MBD1-containing chromatin-associated factor 1
    mAM

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019426.2NP_062299.2  activating transcription factor 7-interacting protein 1

      See identical proteins and their annotated locations for NP_062299.2

      Status: PROVISIONAL

      Source sequence(s)
      BC052460
      Consensus CDS
      CCDS20651.1
      UniProtKB/Swiss-Prot
      Q7TT18
      Related
      ENSMUSP00000032335.6, ENSMUST00000032335.12
      Conserved Domains (2) summary
      pfam16788
      Location:598809
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:11961296
      fn3_4; Fibronectin-III type domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      136518807..136610850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506391.3XP_006506454.1  activating transcription factor 7-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006506454.1

      Conserved Domains (2) summary
      pfam16788
      Location:601812
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:11991299
      fn3_4; Fibronectin-III type domain
    2. XM_017321681.1XP_017177170.1  activating transcription factor 7-interacting protein 1 isoform X2

      UniProtKB/Swiss-Prot
      Q7TT18
      Conserved Domains (2) summary
      pfam16788
      Location:598809
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:11961296
      fn3_4; Fibronectin-III type domain
    3. XM_006506390.3XP_006506453.1  activating transcription factor 7-interacting protein 1 isoform X3

      Conserved Domains (2) summary
      pfam16788
      Location:609820
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:12071307
      fn3_4; Fibronectin-III type domain
    4. XM_006506388.3XP_006506451.2  activating transcription factor 7-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006506451.2

      Conserved Domains (2) summary
      pfam16788
      Location:601812
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:11991299
      fn3_4; Fibronectin-III type domain
    5. XM_006506389.3XP_006506452.2  activating transcription factor 7-interacting protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006506452.2

      UniProtKB/Swiss-Prot
      Q7TT18
      Conserved Domains (2) summary
      pfam16788
      Location:598809
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:11961296
      fn3_4; Fibronectin-III type domain
    6. XM_006506392.3XP_006506455.1  activating transcription factor 7-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006506455.1

      Conserved Domains (2) summary
      pfam16788
      Location:601812
      ATF7IP_BD; ATF-interacting protein binding domain
      pfam16794
      Location:11991299
      fn3_4; Fibronectin-III type domain
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