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    Arl6ip1 ADP-ribosylation factor-like 6 interacting protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 54208, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arl6ip1provided by MGI
    Official Full Name
    ADP-ribosylation factor-like 6 interacting protein 1provided by MGI
    Primary source
    MGI:MGI:1858943
    See related
    Ensembl:ENSMUSG00000030654
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AIP-6; ARMER; Aip-1; Arl6ip; C85138; AL022945; AU042858; mKIAA0069
    Expression
    Ubiquitous expression in placenta adult (RPKM 117.1), CNS E11.5 (RPKM 89.0) and 27 other tissues See more
    Orthologs

    Genomic context

    See Arl6ip1 in Genome Data Viewer
    Location:
    7; 7 F1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (118118890..118129625, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (125262404..125273139, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34878 Neighboring gene ribosomal protein S15A Neighboring gene SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) Neighboring gene predicted gene, 40454 Neighboring gene RIKEN cDNA 4930583K01 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    Sec61 translocon complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Sec61 translocon complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 6-interacting protein 1
    Names
    ADP-ribosylation-like factor 6 interacting protein
    ARL-6-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019419.2NP_062292.1  ADP-ribosylation factor-like protein 6-interacting protein 1

      See identical proteins and their annotated locations for NP_062292.1

      Status: VALIDATED

      Source sequence(s)
      AC131788, AK152565, BC046792
      Consensus CDS
      CCDS21769.1
      UniProtKB/Swiss-Prot
      Q9JKW0
      UniProtKB/TrEMBL
      Q80ZW9
      Related
      ENSMUSP00000032888.7, ENSMUST00000032888.9

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      118118890..118129625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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