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    Rnf5 ring finger protein 5 [ Mus musculus (house mouse) ]

    Gene ID: 54197, updated on 26-Jul-2021

    Summary

    Official Symbol
    Rnf5provided by MGI
    Official Full Name
    ring finger protein 5provided by MGI
    Primary source
    MGI:MGI:1860076
    See related
    Ensembl:ENSMUSG00000015478
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NG2; AA407576; 2410131O05Rik
    Expression
    Ubiquitous expression in kidney adult (RPKM 88.4), large intestine adult (RPKM 73.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rnf5 in Genome Data Viewer
    Location:
    17 B1; 17 18.18 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (34820073..34822535, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (34601099..34603561, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (34738044..34740506, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene pre B cell leukemia homeobox 2 Neighboring gene advanced glycosylation end product-specific receptor Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) Neighboring gene EGF-like domain 8 Neighboring gene palmitoyl-protein thioesterase 2 Neighboring gene proline-rich transmembrane protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables ubiquitin-like protein conjugating enzyme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase RNF5
    Names
    RING-type E3 ubiquitin transferase RNF5
    NP_062276.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019403.3NP_062276.1  E3 ubiquitin-protein ligase RNF5

      See identical proteins and their annotated locations for NP_062276.1

      Status: PROVISIONAL

      Source sequence(s)
      CT009767
      Consensus CDS
      CCDS28650.1
      UniProtKB/Swiss-Prot
      O35445
      Related
      ENSMUSP00000015622.8, ENSMUST00000015622.8
      Conserved Domains (2) summary
      PLN03208
      Location:25117
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:2570
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      34820073..34822535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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