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    CT45A1 cancer/testis antigen family 45 member A1 [ Homo sapiens (human) ]

    Gene ID: 541466, updated on 17-Jun-2024

    Summary

    Official Symbol
    CT45A1provided by HGNC
    Official Full Name
    cancer/testis antigen family 45 member A1provided by HGNC
    Primary source
    HGNC:HGNC:33267
    See related
    Ensembl:ENSG00000268940 MIM:300648; AllianceGenome:HGNC:33267
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT45; CT45-1; CT45.1
    Summary
    Predicted to be involved in snRNA 3'-end processing. Predicted to be part of integrator complex. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis (RPKM 10.8) See more
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    Genomic context

    See CT45A1 in Genome Data Viewer
    Location:
    Xq26.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (135708398..135723228)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (134058013..134066160)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134847372..134856990)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene sarcoma antigen 3, pseudogene Neighboring gene sarcoma antigen 2, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29985 Neighboring gene MGAT2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29986 Neighboring gene MGAT2 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    cancer/testis antigen family 45 member A1
    Names
    cancer/testis antigen 45-1
    cancer/testis antigen 45A1
    cancer/testis antigen CT45-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017417.3NP_001017417.1  cancer/testis antigen family 45 member A1

      See identical proteins and their annotated locations for NP_001017417.1

      Status: VALIDATED

      Source sequence(s)
      AC240442
      Consensus CDS
      CCDS48174.1
      UniProtKB/Swiss-Prot
      B9EIR8, Q5HYN5
      Related
      ENSP00000472303.1, ENST00000594565.6
      Conserved Domains (1) summary
      pfam15300
      Location:122183
      INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      135708398..135723228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011531352.2XP_011529654.1  cancer/testis antigen family 45 member A1 isoform X1

      See identical proteins and their annotated locations for XP_011529654.1

      UniProtKB/Swiss-Prot
      B9EIR8, Q5HYN5
      Related
      ENSP00000470185.2, ENST00000594117.4
      Conserved Domains (1) summary
      pfam15300
      Location:122183
      INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
    2. XM_005278141.5XP_005278198.1  cancer/testis antigen family 45 member A1 isoform X1

      See identical proteins and their annotated locations for XP_005278198.1

      UniProtKB/Swiss-Prot
      B9EIR8, Q5HYN5
      Conserved Domains (1) summary
      pfam15300
      Location:122183
      INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
    3. XM_047442173.1XP_047298129.1  cancer/testis antigen family 45 member A1 isoform X1

      UniProtKB/Swiss-Prot
      B9EIR8, Q5HYN5

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      134058013..134066160
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054327220.1XP_054183195.1  cancer/testis antigen family 45 member A1 isoform X1

      UniProtKB/Swiss-Prot
      B9EIR8, Q5HYN5
    2. XM_054327221.1XP_054183196.1  cancer/testis antigen family 45 member A1 isoform X1

      UniProtKB/Swiss-Prot
      B9EIR8, Q5HYN5