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    Rps28 ribosomal protein S28 [ Mus musculus (house mouse) ]

    Gene ID: 54127, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rps28provided by MGI
    Official Full Name
    ribosomal protein S28provided by MGI
    Primary source
    MGI:MGI:1859516
    See related
    Ensembl:ENSMUSG00000067288 Vega:OTTMUSG00000037209
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in bladder adult (RPKM 320.6), CNS E11.5 (RPKM 303.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps28 in Genome Data Viewer
    Location:
    17; 17 B1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (33823036..33824562, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (33959981..33961443, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene angiopoietin-like 4 Neighboring gene KN motif and ankyrin repeat domains 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A7 Neighboring gene CD320 antigen

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    maturation of SSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    ribosomal small subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosomal small subunit biogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome biogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355384.1NP_001342313.1  40S ribosomal protein S28

      Status: VALIDATED

      Source sequence(s)
      CT030732
      Conserved Domains (1) summary
      cd04457
      Location:1069
      S1_S28E; S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may ...
    2. NM_016844.3NP_058540.1  40S ribosomal protein S28

      See identical proteins and their annotated locations for NP_058540.1

      Status: VALIDATED

      Source sequence(s)
      CT030732
      Consensus CDS
      CCDS37571.1
      UniProtKB/Swiss-Prot
      P62858
      UniProtKB/TrEMBL
      Q059I1
      Related
      ENSMUSP00000110013.4, OTTMUSP00000053566, ENSMUST00000087342.12
      Conserved Domains (1) summary
      cd04457
      Location:1069
      S1_S28E; S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      33823036..33824562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524624.3XP_006524687.1  40S ribosomal protein S28 isoform X1

      UniProtKB/Swiss-Prot
      P62858
      UniProtKB/TrEMBL
      Q059I1
      Related
      ENSMUSP00000133357.1, OTTMUSP00000053568, ENSMUST00000173844.7, OTTMUST00000095945
      Conserved Domains (1) summary
      cd04457
      Location:1069
      S1_S28E; S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may ...

    Reference GRCm38.p4 129X1/SvJ

    Genomic

    1. NT_039662.3 Reference GRCm38.p4 129X1/SvJ

      Range
      71800..73261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187027.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      138329..139787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187004.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      138421..139879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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